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phaeoexplorer-change_transcript_fasta_header.sh 197 B
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#!/usr/bin/env bash
INFILE=$1
OUTFILE=tmpfile
./common-stringSubsitute.py -i $INFILE -o $OUTFILE -p '^>\d+ mRNA' -r '>mRNA' || mv $OUTFILE $INFILE || echo "'>[0-9]+ mRNA' replaced by '>mRNA' in $1"