organisms.yml.j2

- {{ org_param_name  }}: {{ org_param_name_value }}
  {{ org_param_desc }}:
    {{ org_param_desc_genus }}: {{ org_param_desc_genus_value }}
    {{ org_param_desc_species }}: {{ org_param_desc_species_value }}
    {{ org_param_desc_sex }}: {{ org_param_desc_sex_value }}
    {{ org_param_desc_strain }}: {{ org_param_desc_strain_value }}
    {{ org_param_desc_common_name }}: {{ org_param_desc_common_name_value }}
    {{ org_param_desc_origin }}: {{ org_param_desc_origin_value }}
    {{ org_param_desc_picture_path }}: {{ org_param_desc_picture_path_value }}
    {% if org_param_desc_main_species_value is defined and org_param_desc_main_species_value is sameas true %}
    {{ org_param_desc_main_species }}: yes
    {% endif %}
    {{ org_param_desc_database }}: {{ org_param_desc_database_value }}
  {{ org_param_data }}:
    {{ org_param_data_genome_path }}: {{ org_param_data_genome_path_value }}
    {{ org_param_data_genome_contig_prefix }}: {{ org_param_data_genome_contig_prefix_value }}
    {{ org_param_data_genome_analysis_program }}: {{ org_param_data_genome_analysis_program }}
    {{ org_param_data_genome_analysis_sourcename }}: {{ org_param_data_genome_analysis_sourcename }}
    {{ org_param_data_genome_analysis_date }}: {{ org_param_data_genome_analysis_date }}
    {{ org_param_data_ogs_analysis_program }}: {{ org_param_data_ogs_analysis_program }}
    {{ org_param_data_ogs_analysis_sourcename }}: {{ org_param_data_ogs_analysis_sourcename }}
    {{ org_param_data_ogs_analysis_date }}: {{ org_param_data_ogs_analysis_date }}
    {{ org_param_data_transcripts_path }}: {{ org_param_data_transcripts_path_value }}
    {{ org_param_data_proteins_path }}: {{ org_param_data_proteins_path_value }}
    {{ org_param_data_gff_path }}: {{ org_param_data_gff_path_value }}
    {{ org_param_data_interpro_path }}: {{ org_param_data_interpro_path_value }}
    {{ org_param_data_orthofinder_path }}: {{ org_param_data_orthofinder_path_value }}
    {{ org_param_data_blastp_path }}: {{ org_param_data_blastp_path_value }}
    {{ org_param_data_blastx_path }}: {{ org_param_data_blastx_path_value }}
    {{ org_param_data_genome_version }}: {{ org_param_data_genome_version_value }}
    {{ org_param_data_ogs_version }}: {{ org_param_data_ogs_version_value }}
  {{ org_param_services }}:
    {{ org_param_services_blast }}: {{ org_param_services_blast_value }}
    {{ org_param_services_go }}: {{ org_param_services_go_value }}