update_service.py

#!/usr/bin/env python3
# -*- coding: utf-8 -*-

import argparse
import logging
import utilities

def run_docker_service_update(stack, service):
    utilities.run_command(["docker", "service", "update", "--force", stack + "_" + service])

if __name__ == "__main__":
    parser = argparse.ArgumentParser(description="Update a service for all the stacks")

    parser.add_argument("-s", "--service",
                        choices=["tripal", "galaxy", "jbrowse", "tripal-db", "elasticsearch", "proxy"],
                        help="Service to update")

    parser.add_argument("-v", "--verbose",
                        help="Increase output verbosity",
                        action="store_true")

    args = parser.parse_args()
    service = args.service

    if args.verbose:
        logging.basicConfig(level=logging.DEBUG)
        logging.debug("Debug mode")
    else:
        logging.basicConfig(level=logging.INFO)

    stacks = utilities.run_docker_stack_ls()

    # Stop the Galaxy services
    for stack in stacks:
        if stack not in ["traefik", "portainer"]:
            run_docker_service_update(
                stack=stack,
                service=service
            )