config.yml

# This is the configuration template file used by the gga_init.py, gga_load_data.py and run_workflow.py scripts

# These variables are used by several services at once or the paths to import sensitive files
hostname: fancydb.com  # Required. The hostname that will be used to access the application (http://hostname/sp/genus_species/)), possibly with a reverse proxy redirecting the requests to the host machine with the right port (http_port).
http_port: 80  # Required. The HTTP port docker will use on the hosting machine
https_port: 443  # Required for Authelia. The HTTPS port docker will use on the hosting machine
proxy_ip: XXX.XXX.XXX.XXX  # Required. IP of the upstream proxy (used by Traefik)
authentication_domain_name: auth.fancydb.com  #  Required for Authelia. The authentication domain name.
authelia_config_path: /path/to/authelia_config.yml #  Required for Authelia. Path to the Authelia configuration file
authelia_secrets_env_path: /path/to/authelia/secrets.env #  Required for Authelia. Path to the env file containing passwords and secrets needed for Authelia
authelia_db_postgres_password: psqlpwd #  Required for Authelia.

# galaxy-specific variables
galaxy_default_admin_email: gga@galaxy.org  # Required
galaxy_default_admin_user: gga  # Required
galaxy_default_admin_password: password  # Required
galaxy_config_remote_user_maildomain: mydomain.com  # Required. The maildomain used by Galaxy authentication
galaxy_persist_data: "True"  # Optional (default: True). If False, docker data will NOT be persisted on your host's file system and will be lost any time the galaxy container is recreated. Do not set this variable to "False" for production

# tripal-specific variables
tripal_password: tripalpass  # Required. Tripal database password (also used by galaxy as an environment variable)
tripal_banner_path: /path/to/banner.png  # Optional. Use this to change the top banner in Tripal
tripal_theme_name: tripal_gga   # Optional. Use this to use another theme
tripal_theme_git_clone: http://gitlab.sb-roscoff.fr/abims/e-infra/tripal_gga.git  # Optional. Use this to install another theme.

# jbrowse-specific variables
jbrowse_menu_url: "http://localhost:8888/" # Optional. Used with run_workflow_phaeoexplorer.py: if present, this variable is used to define JBrowse menu_url (to define the template url for the JBrowse feature's link to Tripal), if absent, will use default "https://hostname"