Skip to content
Snippets Groups Projects
Interproscan.ga 8.73 KiB
{
    "a_galaxy_workflow": "true",
    "annotation": "",
    "format-version": "0.1",
    "name": "Interproscan",
    "steps": {
        "0": {
            "annotation": "",
            "content_id": null,
            "errors": null,
            "id": 0,
            "input_connections": {},
            "inputs": [],
            "label": null,
            "name": "Input dataset",
            "outputs": [],
            "position": {
                "left": 200,
                "top": 200
            },
            "tool_id": null,
            "tool_state": "{\"optional\": false}",
            "tool_version": null,
            "type": "data_input",
            "uuid": "89e7487e-004d-4db1-b5eb-1676b98aebde",
            "workflow_outputs": [
                {
                    "label": null,
                    "output_name": "output",
                    "uuid": "032bfe93-96b6-4628-a7e2-209f92a94b4f"
                }
            ]
        },
        "1": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/gga/chado_load_interpro/load_interpro/2.3.4+galaxy0",
            "errors": null,
            "id": 1,
            "input_connections": {
                "input": {
                    "id": 0,
                    "output_name": "output"
                },
                "wait_for": {
                    "id": 0,
                    "output_name": "output"
                }
            },
            "inputs": [
                {
                    "description": "runtime parameter for tool Chado load InterProScan results",
                    "name": "analysis_id"
                },
                {
                    "description": "runtime parameter for tool Chado load InterProScan results",
                    "name": "organism_id"
                }
            ],
            "label": null,
            "name": "Chado load InterProScan results",
            "outputs": [
                {
                    "name": "results",
                    "type": "json"
                }
            ],
            "position": {
                "left": 487.66668701171875,
                "top": 200
            },
            "post_job_actions": {},
            "tool_id": "toolshed.g2.bx.psu.edu/repos/gga/chado_load_interpro/load_interpro/2.3.4+galaxy0",
            "tool_shed_repository": {
                "changeset_revision": "3284a0c7570e",
                "name": "chado_load_interpro",
                "owner": "gga",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"analysis_id\": {\"__class__\": \"RuntimeValue\"}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"match_on_name\": \"false\", \"organism_id\": {\"__class__\": \"RuntimeValue\"}, \"parse_go\": \"false\", \"psql_target\": {\"method\": \"remote\", \"__current_case__\": 0}, \"query_type\": \"polypeptide\", \"re_name\": \"\", \"skip_missing\": \"false\", \"wait_for\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
            "tool_version": "2.3.4+galaxy0",
            "type": "tool",
            "uuid": "81eab133-ed2e-4302-9c3c-75c035a12840",
            "workflow_outputs": [
                {
                    "label": null,
                    "output_name": "results",
                    "uuid": "e53f0344-9fde-4489-a951-636507c6bef8"
                }
            ]
        },
        "2": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_analysis_sync/analysis_sync/3.2.1.0",
            "errors": null,
            "id": 2,
            "input_connections": {
                "wait_for": {
                    "id": 1,
                    "output_name": "results"
                }
            },
            "inputs": [
                {
                    "description": "runtime parameter for tool Synchronize an analysis",
                    "name": "analysis_id"
                },
                {
                    "description": "runtime parameter for tool Synchronize an analysis",
                    "name": "wait_for"
                }
            ],
            "label": null,
            "name": "Synchronize an analysis",
            "outputs": [
                {
                    "name": "results",
                    "type": "json"
                }
            ],
            "position": {
                "left": 775.3333740234375,
                "top": 200
            },
            "post_job_actions": {},
            "tool_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_analysis_sync/analysis_sync/3.2.1.0",
            "tool_shed_repository": {
                "changeset_revision": "f487ff676088",
                "name": "tripal_analysis_sync",
                "owner": "gga",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"analysis_id\": {\"__class__\": \"RuntimeValue\"}, \"wait_for\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
            "tool_version": "3.2.1.0",
            "type": "tool",
            "uuid": "8ed9fc57-f900-456f-9c77-b75a20d90b76",
            "workflow_outputs": [
                {
                    "label": null,
                    "output_name": "results",
                    "uuid": "7c31aa69-2993-4d1f-a6ef-6a014cf68964"
                }
            ]
        },
        "3": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_db_populate_mviews/db_populate_mviews/3.2.1.0",
            "errors": null,
            "id": 3,
            "input_connections": {
                "wait_for": {
                    "id": 2,
                    "output_name": "results"
                }
            },
            "inputs": [],
            "label": null,
            "name": "Populate materialized views",
            "outputs": [
                {
                    "name": "results",
                    "type": "txt"
                }
            ],
            "position": {
                "left": 1063,
                "top": 200
            },
            "post_job_actions": {},
            "tool_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_db_populate_mviews/db_populate_mviews/3.2.1.0",
            "tool_shed_repository": {
                "changeset_revision": "3c08f32a3dc1",
                "name": "tripal_db_populate_mviews",
                "owner": "gga",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"mview\": \"\", \"wait_for\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
            "tool_version": "3.2.1.0",
            "type": "tool",
            "uuid": "7da6acf6-87a1-4c26-a750-3bf410d2642d",
            "workflow_outputs": [
                {
                    "label": null,
                    "output_name": "results",
                    "uuid": "b747c370-0b27-4a8a-b1dd-71c0f9635cc6"
                }
            ]
        },
        "4": {
            "annotation": "",
            "content_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_db_index/db_index/3.2.1.1",
            "errors": null,
            "id": 4,
            "input_connections": {
                "wait_for": {
                    "id": 3,
                    "output_name": "results"
                }
            },
            "inputs": [],
            "label": null,
            "name": "Index Tripal data",
            "outputs": [
                {
                    "name": "results",
                    "type": "txt"
                }
            ],
            "position": {
                "left": 1350.6666259765625,
                "top": 200
            },
            "post_job_actions": {},
            "tool_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_db_index/db_index/3.2.1.1",
            "tool_shed_repository": {
                "changeset_revision": "d55a39f12dda",
                "name": "tripal_db_index",
                "owner": "gga",
                "tool_shed": "toolshed.g2.bx.psu.edu"
            },
            "tool_state": "{\"expose\": {\"do_expose\": \"no\", \"__current_case__\": 0}, \"queues\": \"10\", \"table\": {\"mode\": \"website\", \"__current_case__\": 0}, \"tokenizer\": \"standard\", \"wait_for\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
            "tool_version": "3.2.1.1",
            "type": "tool",
            "uuid": "5808d837-a507-4fe5-8a90-ad1934645b56",
            "workflow_outputs": [
                {
                    "label": null,
                    "output_name": "results",
                    "uuid": "2db45aa2-e09e-493b-b095-47dac7dff6fc"
                }
            ]
        }
    },
    "tags": [],
    "uuid": "3446613c-b251-4a11-98fe-4965948773c3",
    "version": 4
}