Divided into 3 separate scripts: deploy_stacks.py, load_data.py, run_workflow.py
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- .gitignore 107 additions, 7 deletions.gitignore
- __pycache__/docker_compose_generator.cpython-36.pyc 0 additions, 0 deletions__pycache__/docker_compose_generator.cpython-36.pyc
- __pycache__/docker_compose_generator.cpython-38.pyc 0 additions, 0 deletions__pycache__/docker_compose_generator.cpython-38.pyc
- __pycache__/metadata_generator.cpython-36.pyc 0 additions, 0 deletions__pycache__/metadata_generator.cpython-36.pyc
- __pycache__/metadata_generator.cpython-38.pyc 0 additions, 0 deletions__pycache__/metadata_generator.cpython-38.pyc
- __pycache__/table_parser.cpython-36.pyc 0 additions, 0 deletions__pycache__/table_parser.cpython-36.pyc
- __pycache__/table_parser.cpython-38.pyc 0 additions, 0 deletions__pycache__/table_parser.cpython-38.pyc
- create_input_instance.py 46 additions, 62 deletionscreate_input_instance.py
- deploy_stacks.py 92 additions, 668 deletionsdeploy_stacks.py
- docker_compose_generator.py 2 additions, 16 deletionsdocker_compose_generator.py
- examples/json_example_input.json 0 additions, 0 deletionsexamples/json_example_input.json
- examples/yml_example_input.yml 5 additions, 5 deletionsexamples/yml_example_input.yml
- galaxy_data_libs_SI.py 0 additions, 0 deletionsgalaxy_data_libs_SI.py
- load_data.py 245 additions, 8 deletionsload_data.py
- run_workflow.py 462 additions, 0 deletionsrun_workflow.py
- table_parser.py 79 additions, 80 deletionstable_parser.py
- templates/compose-template.yml 1 addition, 1 deletiontemplates/compose-template.yml
- templates/stack-organism.yml 2 additions, 2 deletionstemplates/stack-organism.yml
- utils/__init__.py 0 additions, 0 deletionsutils/__init__.py
- utils/blastdb.py 0 additions, 0 deletionsutils/blastdb.py
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