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Commit 275690b2 authored by Loraine Guéguen's avatar Loraine Guéguen Committed by Loraine Gueguen
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Update README

parent bb65c6d8
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1 merge request!28WIP: Fix empty strain sex
......@@ -66,7 +66,7 @@ in the `examples` folder.
**The input file and config file have to be the same for all scripts!**
- Deploy stacks part:
- Deploy Docker stacks:
```bash
$ python3 /path/to/repo/gga_init.py input_file.yml \
......@@ -76,7 +76,7 @@ $ python3 /path/to/repo/gga_init.py input_file.yml \
[-v/--verbose]
```
- Copy source data file:
- Copy source data files:
```bash
$ python3 /path/to/repo/gga_get_data.py input_file.yml \
......@@ -93,7 +93,7 @@ $ python3 /path/to/repo/gga_load_data.py input_file.yml \
[-v/--verbose]
```
- Run a workflow in galaxy (example):
- Run a workflow in Galaxy (example script, specific to Phaeoexplorer data):
```bash
$ python3 /path/to/repo/gga_run_workflow_phaeo_jbrowse.py input_file.yml \
......
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