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abims
e-infra
gga_load_data
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3a63edf0
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3a63edf0
authored
3 years ago
by
Loraine Guéguen
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Release v2.1.0
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@@ -49,10 +49,10 @@ Note that Authelia needs a secured connexion (no self-signed certificate) betwee
The "gga_load_data" tools are composed of 4 scripts:
-
gga_init: Create directory tree for organisms and deploy stacks for the input organisms as well as Traefik and optionally Authelia stacks
-
gga_get_data: Create
`src_data`
directory tree for organisms and copy datasets for the input organisms into
`src_data`
-
gga_load_data: Load the datasets of the input organisms into their Galaxy library
-
gga_run_workflow_phaeo
*
: Multiple scripts to run custom workflows in Galaxy, proposed as "example scripts" to take inspiration from
-
`
gga_init
.py`
: Create directory tree for organisms and deploy stacks for the input organisms as well as Traefik and optionally Authelia stacks
-
`
gga_get_data
.py`
: Create
`src_data`
directory tree for organisms and copy datasets for the input organisms into
`src_data`
-
`
gga_load_data
.py`
: Load the datasets of the input organisms into their Galaxy library
-
`
gga_run_workflow_phaeo
_*.py`
: Multiple scripts to run custom workflows in Galaxy, proposed as "example scripts" to take inspiration from
as workflow parameters are specific to the
[
Phaeoexplorer
](
https://phaeoexplorer.sb-roscoff.fr
)
data
## Usage:
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