workflow 2org

speciesData.py

@@ -59,17 +59,24 @@ class SpeciesData:
         self.full_name_lowercase = self.full_name.lower()
         self.abbreviation = "_".join(utilities.filter_empty_not_empty_items([self.genus_lowercase[0], self.species, self.strain, self.sex])["not_empty"])
         
+        # Bioblend/Chado IDs for an organism analyses/organisms/datasets/history/library
+        self.org_id = None
+        self.genome_analysis_id = None
+        self.ogs_analysis_id = None
+        self.interproscan_analysis_id = None
+        self.blastp_diamond_analysis_id = None
+        self.blastx_diamond_analysis_id = None
+        self.hda_ids = {}
         self.instance_url = None
         self.instance = None
         self.history_id = None
         self.library = None
         self.library_id = None
+
         self.script_dir = os.path.dirname(os.path.realpath(sys.argv[0]))
         self.main_dir = None
         self.species_dir = None
-        self.org_id = None
-        self.genome_analysis_id = None
-        self.ogs_analysis_id = None
+
         self.tool_panel = None
         self.datasets = dict()
         self.datasets_name = dict()