factorize code

utilities.py

@@ -147,13 +147,7 @@ def get_unique_species_str_list(sp_dict_list):
     unique_species_li = []
 
     for sp in sp_dict_list:
-        for k, v in sp.items():
-            sp_gspecies = ""
-            for k2, v2 in v.items():
-                if k2 == "genus":
-                    sp_gspecies = sp_gspecies.lower() + v2
-                elif k2 == "species":
-                    sp_gspecies = sp_gspecies.lower() + "_" + v2
+        sp_gspecies = get_gspecies_string_from_sp_dict(sp)
         if sp_gspecies not in unique_species_li and sp_gspecies != "":
             unique_species_li.append(sp_gspecies)