removed old example input

examples/input_example.yml

-# Input file for the automated creation GGA docker stacks
-# The file consists in a "list" of species for which the script will have to create these stacks/load data into galaxy/run workflows
-# This file is internally turned into a list of dictionaries by the scripts
-
-ectocarpus_sp2_male:  # Dummy value the user gives to designate the species (isn't used by the script)
-  description:
-  # Species description, leave blank if unknown or you don't want it to be used
-  # These parameters are used to set up the various urls and adresses in different containers
-  # The script requires at least the genus to be specified
-    genus: "ectocarpus"  # Mandatory!
-    species: "sp2" # # Mandatory!
-    sex: "male"
-    strain: ""
-    common_name: ""
-    origin: ""
-  # the sex and strain, the script will look for files containing the genus, species, sex and strain of the species)
-  # If no file corresponding to the description is found, this path will be considered empty and the script will
-  # proceed to the next step (create the directory tree for the GGA docker stack)
-  data:
-  # Sequence of paths to the different datasets to copy and import into galaxy
-  # Paths must be absolute paths
-    genome_path: "/path/to/fasta" # Mandatory!
-    transcripts_path: "/path/to/fasta"  # Mandatory!
-    proteins_path: "/path/to/fasta" # Mandatory!
-    gff_path: "/path/to/gff" # Mandatory!
-    interpro_path: "/path/to/interpro"
-    orthofinder_path: "/path/to/orthofinder"
-    blastp_path: "/path/to/blastx"
-    blastx_path: "/path/to/blastp"
-    # If the user has several datasets of the same 'nature' (gff, genomes, ...) to upload to galaxy, the next scalar is used by the script to differentiate
-    # between these different versions and name directories according to it and not overwrite the existing data
-    # If left empty, the genome will be considered version "1.0"
-    genome_version: "1.0"
-    # Same as genome version, but for the OGS analysis
-    ogs_version: ""
-    performed_by: ""
-  services:
-  # Describe what optional services to deploy for the stack
-  # By default, only tripal, tripaldb and galaxy services will be deployed
-    blast: "False"
-    wiki: "False"
-    apollo: "False"
-
-# Second example without the explanation
-ectocarpus_sp2_female:
-  description:
-    genus: "ectocarpus"
-    species: "sp2"
-    sex: "female"
-    strain: ""
-    common_name: ""
-    origin: ""
-  data:
-    genome_path: "/path/to/fasta"
-    transcripts_path: "/path/to/fasta"
-    proteins_path: "/path/to/fasta"
-    gff_path: "/path/to/gff"
-    interpro_path: "/path/to/interpro"
-    orthofinder_path: "/path/to/orthofinder"
-    blastp_path: "/path/to/blastx"
-    blastx_path: "/path/to/blastp"
-    genome_version: "1.0"
-    ogs_version: "1.0"
-    performed_by: ""
-  services:
-    blast: "False"
-    wiki: "False"
-    apollo: "False"
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