Add citrus sinensis peptide fasta file

examples/citrus_sinensis.yml

@@ -23,7 +23,7 @@
     # example: "contig_prefix1;contig_prefix2"
     contig_prefix:
     transcripts_path: /path/to/repo/examples/src_data/annotation/v1.0/Citrus_sinensis-orange1.1g015632m.g.fasta
-    proteins_path: # Mandatory!
+    proteins_path: /path/to/repo/examples/src_data/annotation/v1.0/Citrus_sinensis-orange1.1g015632m.g.pep.fasta
     gff_path: /path/to/repo/examples/src_data/annotation/v1.0/Citrus_sinensis-orange1.1g015632m.g.gff3 # Mandatory!
     interpro_path: /path/to/repo/examples/src_data/annotation/v1.0/functional_annotation/Citrus_sinensis-orange1.1g015632m.g.iprscan.xml
     orthofinder_path:

examples/src_data/README.md

@@ -13,3 +13,5 @@ http://www.gmod.org/mediawiki/images/1/13/Citrus_sinensis-orange1.1g015632m.g.KE
 http://www.gmod.org/mediawiki/images/e/e8/Blastx_citrus_sinensis-orange1.1g015632m.g.fasta.0_vs_uniprot_sprot.fasta.out
 
 http://www.gmod.org/mediawiki/images/2/24/Blastx_citrus_sinensis-orange1.1g015632m.g.fasta.0_vs_nr.out
+
+https://www.citrusgenomedb.org
\ No newline at end of file

examples/src_data/annotation/v1.0/Citrus_sinensis-orange1.1g015632m.g.pep.fasta

+>orange1.1g015632m PAC-18136217 (polypeptide) Citrus sinensis
+MASVSVVPASGNTVGVDRLPEEMNDMKIRDDKEMEATVVDGNGTEAGHII
+VTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGEAVAIKKVLQ
+DKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVH
+RVIKHHYKMSQRMPLIYVKLYFYQICRALAYIHNTIGVCHRDIKPQNLLV
+NPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAID
+IWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYT
+EFKFPQIKAHPWHKIFQKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPF
+FDELRDPNTRLPNGRFLPPLFNFKPHELKGVPVDMLVKLIPEHARKQCAF
+LGL*
+>orange1.1g015662m PAC-18136220 (polypeptide) Citrus sinensis
+MASVSVVPASGNTVGVDRLPEEMNDMKIRDDKEMEATVVDGNGTEAGHII
+VTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGEAVAIKKVLQ
+DKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVH
+RVIKHHYKMSQRMPLIYVKLYFYQICRALAYIHNTIGVCHRDIKPQNLLV
+NPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAID
+IWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYT
+EFKFPQIKAHPWHKIFQKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPF
+FDELRDPNTRLPNGRFLPPLFNFKPHELKGVPVDMLVKLIPEHARKQCAF
+LGL*
+>orange1.1g018514m PAC-18136222 (polypeptide) Citrus sinensis
+MASVSVVPASGNTVGVDRLPEEMNDMKIRDDKEMEATVVDGNGTEAGHII
+VTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGEAVAIKKVLQ
+DKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVH
+RVIKHHYKMSQRMPLIYVKLYFYQICRALAYIHNTIGVCHRDIKPQNLLV
+NPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAID
+IWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYT
+EFKFPQIKAHPWHKIFQKRMPPEAVDLVSRLLQYSPNLRSTAFDAVGSFD
+SSFL*
+>orange1.1g015615m PAC-18136219 (polypeptide) Citrus sinensis
+MASVSVVPASGNTVGVDRLPEEMNDMKIRDDKEMEATVVDGNGTEAGHII
+VTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGEAVAIKKVLQ
+DKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVH
+RVIKHHYKMSQRMPLIYVKLYFYQICRALAYIHNTIGVCHRDIKPQNLLV
+NPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAID
+IWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYT
+EFKFPQIKAHPWHKIFQKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPF
+FDELRDPNTRLPNGRFLPPLFNFKPHELKGVPVDMLVKLIPEHARKQCAF
+LGL*
+>orange1.1g015645m PAC-18136218 (polypeptide) Citrus sinensis
+MASVSVVPASGNTVGVDRLPEEMNDMKIRDDKEMEATVVDGNGTEAGHII
+VTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGEAVAIKKVLQ
+DKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVH
+RVIKHHYKMSQRMPLIYVKLYFYQICRALAYIHNTIGVCHRDIKPQNLLV
+NPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAID
+IWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYT
+EFKFPQIKAHPWHKIFQKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPF
+FDELRDPNTRLPNGRFLPPLFNFKPHELKGVPVDMLVKLIPEHARKQCAF
+LGL*
+>orange1.1g022520m PAC-18136223 (polypeptide) Citrus sinensis
+MASVSVVPASGNTVGVDRLPEEMNDMKIRDDKEMEATVVDGNGTEAGHII
+VTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGEAVAIKKVLQ
+DKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVH
+RVIKHHYKMSQRMPLIYVKLYFYQICRALAYIHNTIGVCHRDIKPQNLLV
+NPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAID
+IWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVILHTEISLSIKAA*
+>orange1.1g022799m PAC-18136224 (polypeptide) Citrus sinensis
+MRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHHYKMSQ
+RMPLIYVKLYFYQICRALAYIHNTIGVCHRDIKPQNLLVNPHTHQLKLCD
+FGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAIDIWSAGCVLAEL
+LLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHP
+WHKIFQKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPFFDELRDPNTRL
+PNGRFLPPLFNFKPHELKGVPVDMLVKLIPEHARKQCAFLGL*
+>orange1.1g022797m PAC-18136225 (polypeptide) Citrus sinensis
+MRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHHYKMSQ
+RMPLIYVKLYFYQICRALAYIHNTIGVCHRDIKPQNLLVNPHTHQLKLCD
+FGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAIDIWSAGCVLAEL
+LLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHP
+WHKIFQKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPFFDELRDPNTRL
+PNGRFLPPLFNFKPHELKGVPVDMLVKLIPEHARKQCAFLGL*
+>orange1.1g017341m PAC-18136221 (polypeptide) Citrus sinensis
+MQEMEATVVDGNGTEAGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGV
+VFQAKCLETGEAVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFST
+TEKDELYLNLVLEYVPETVHRVIKHHYKMSQRMPLIYVKLYFYQICRALA
+YIHNTIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICS
+RYYRAPELIFGATEYTAAIDIWSAGCVLAELLLGQPLFPGESGVDQLVEI
+IKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFQKRMPPEAVDLVSR
+LLQYSPNLRSTALEALIHPFFDELRDPNTRLPNGRFLPPLFNFKPHELKG
+VPVDMLVKLIPEHARKQCAFLGL*
+
+