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Commit cb7db4d8 authored by Arthur Le Bars's avatar Arthur Le Bars
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Worfklow 2 organisms v3

parent a1d874e2
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2 merge requests!9Release 2.0 (merge dev to master),!5Workflow v2
......@@ -1049,7 +1049,7 @@ if __name__ == "__main__":
logging.info("Input organism %s: 2 species detected in input dictionary" % k)
# Set workflow path (2 organisms)
workflow_path = os.path.join(os.path.abspath(script_dir), "workflows/Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_2org_v2.ga")
workflow_path = os.path.join(os.path.abspath(script_dir), "workflows/Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_2org_v3.ga")
# Instance object required variables
instance_url, email, password = None, None, None
......@@ -1202,7 +1202,7 @@ if __name__ == "__main__":
workflow_dict["steps"]["10"]["tool_state"] = workflow_dict["steps"]["10"]["tool_state"].replace("__FULL_NAME_ORG2__", org2_full_name).replace("__UNIQUE_ID_ORG2__", org2_species_folder_name)
print(workflow_dict)
# Import the workflow in galaxy as a dict
instance.workflows.import_workflow_dict(workflow_dict=workflow_dict)
......
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