# This is the configuration template file used by the gga_init.py gga_load_data.py and run_workflow.py scripts
# It contains (sensible) variables to set up different docker services and should not be committed in production
# This is the configuration template file used by the gga_init.py, gga_load_data.py and run_workflow.py scripts
# "all" section contains variables used by several services at once or the paths to import sensible files that cannot be procedurally generated/formatted using the scripts
# "all" section contains variables used by several services at once or the paths to import sensitive files
all:
hostname:localhost# The hosting machine name
dashboard_port:8001# The desired port (on the hosting machine) for the traefik container dashboard
http_port:8888# The HTTP port docker will use on the hosting machine
https_port:8889# The HTTPS port docker will use on the hosting machine. If present, docker will deploy stacks using an HTTPS configuration with authelia authentication
proxy_ip:XXXXXXXXXXXX# IP of the upstream proxy (used by traefik)
auth_hostname:XXXXXXXXXXXX# The authentication domain name, not required if running only using HTTP
authelia_config_path:/path/to/authelia_config.yml# Path to the custom authelia configuration file
# galaxy-specific environment variables
https_port:8889# The HTTPS port docker will use on the hosting machine. Required for Authelia
proxy_ip:XXXXXXXXXXXX# IP of the upstream proxy (used by Traefik)
auth_hostname:XXXXXXXXXXXX# Required for Authelia. The authentication domain name.
authelia_config_path:/path/to/authelia_config.yml# Required for Authelia. Path to the Authelia configuration file
# galaxy-specific variables
galaxy:
galaxy_default_admin_email:gga@galaxy.org
galaxy_defaut_admin_user:gga
galaxy_default_admin_password:password
# galaxy_config_master_api_key: master
webapollo_user:admin_apollo@galaxy.org
webapollo_password:apollopass
persist_galaxy_data:"True"# If True, docker data will be backed up
galaxy_config_remote_user_maildomain:sb-roscoff.fr# The maildomain used by galaxy authentication
galaxy_config_remote_user_maildomain:mydomain.com# The maildomain used by Galaxy authentication
persist_galaxy_data:"True"# Optional. If True, docker data will be backed up. Do not set this variable to "false" for production
# tripal-specific variables
tripal:
tripal_password:tripalpass# Tripal database password (also used by galaxy as an environment variable)
tripal_theme_name:abims# Use this to use another theme
tripal_theme_git_clone:http://gitlab.sb-roscoff.fr/abims/e-infra/tripal_abims.git# Use this to install another theme (cannot be named custom_theme_git_clone currently)
tripal_theme_name:tripal_gga# Optional. Use this to use another theme
tripal_theme_git_clone:http://gitlab.sb-roscoff.fr/abims/e-infra/tripal_gga.git# Optional. Use this to install another theme.
# jbrowse-specific variables
jbrowse:
menu_url:"http://localhost:8888/"# If present, this variable is used to define jbrowse menu_url, if absent, will use https://hostname:https_port instead
menu_url:"http://localhost:8888/"# Used with run_workflow_phaeoexplorer.py. If present, this variable is used to define jbrowse menu_url, if absent, will use https://hostname:https_port instead
