Release 2.0

gga_load_data.py:

• Factorize goto_species_dir(), create_galaxy_instance(), run_tool(), get_species_dir()
• Move constants at the beginning
• Revert upload_from_local() to upload_from_galaxy_fs() (to enable symlink, instead of copy)
• Add missing get_bam_label()

README:

• update contributors

gga_load_data.py

@@ -142,7 +142,7 @@ class LoadData(speciesData.SpeciesData):
 
             for fname, files in folders.items():
                 if fname and files:
-                    folder_name = re.sub(data_dir_root, CONTAINER_DATA_DIR_ROOT, fname)
+                    folder_name = re.sub(data_dir_root, "", fname)
                     logging.info("Creating folder: %s" % folder_name)
                     folder = self.create_deep_folder(prj_lib, folder_name)