release 1.0.1

• copy nginx conf from file or template
• define required param in config_example.yml
• fix species folder name (remove -)
• fix mount of unused galaxy_data_libs.py in docker-compose file

examples/config_example.yml

@@ -2,25 +2,25 @@
 
 # "all" section contains variables used by several services at once or the paths to import sensitive files
 all:
-      hostname: localhost  # The hosting machine name
-      dashboard_port: 8001  # The desired port (on the hosting machine) for the traefik container dashboard
-      http_port: 8888  # The HTTP port docker will use on the hosting machine 
-      https_port: 8889  # Optional. The HTTPS port docker will use on the hosting machine. Required for Authelia
-      proxy_ip: XXXXXXXXXXXX  # IP of the upstream proxy (used by Traefik)
-      authentication_domain_name: XXXXXXXXXXXX  #  Optional. Required for Authelia. The authentication domain name.
-      authelia_config_path: /path/to/authelia_config.yml #  Optional. Required for Authelia. Path to the Authelia configuration file
+      hostname: localhost  # Required. The hosting machine name
+      dashboard_port: 8001  # Required. The desired port (on the hosting machine) for the traefik container dashboard
+      http_port: 8888  # Required. The HTTP port docker will use on the hosting machine 
+      https_port: 8889  # Required for Authelia. The HTTPS port docker will use on the hosting machine
+      proxy_ip: XXXXXXXXXXXX  # Required. IP of the upstream proxy (used by Traefik)
+      authentication_domain_name: XXXXXXXXXXXX  #  Required for Authelia. The authentication domain name.
+      authelia_config_path: /path/to/authelia_config.yml #  Required for Authelia. Path to the Authelia configuration file
 # galaxy-specific variables
 galaxy:
-      galaxy_default_admin_email: gga@galaxy.org
-      galaxy_defaut_admin_user: gga
-      galaxy_default_admin_password: password
-      webapollo_user: admin_apollo@galaxy.org
-      webapollo_password: apollopass
-      galaxy_config_remote_user_maildomain: mydomain.com  # The maildomain used by Galaxy authentication
+      galaxy_default_admin_email: gga@galaxy.org  # Required
+      galaxy_defaut_admin_user: gga  # Required
+      galaxy_default_admin_password: password  # Required
+      webapollo_user: admin_apollo@galaxy.org  # Required
+      webapollo_password: apollopass  # Required
+      galaxy_config_remote_user_maildomain: mydomain.com  # Required. The maildomain used by Galaxy authentication
       persist_galaxy_data: "True"  # Optional. If True, docker data will be backed up. Do not set this variable to "false" for production
 # tripal-specific variables
 tripal:
-      tripal_password: tripalpass  # Tripal database password (also used by galaxy as an environment variable)
+      tripal_password: tripalpass  # Required. Tripal database password (also used by galaxy as an environment variable)
       banner_path: /my/path/banner.png  # Optional. Custom banner path 
       tripal_theme_name: tripal_gga   # Optional. Use this to use another theme
       tripal_theme_git_clone: http://gitlab.sb-roscoff.fr/abims/e-infra/tripal_gga.git  # Optional. Use this to install another theme.