release 1.0.1

• copy nginx conf from file or template
• define required param in config_example.yml
• fix species folder name (remove -)
• fix mount of unused galaxy_data_libs.py in docker-compose file

run_workflow_phaeoexplorer.py

@@ -492,7 +492,7 @@ class RunWorkflow(speciesData.SpeciesData):
             # In case of the Jbrowse workflow, we unfortunately have to manually edit the parameters instead of setting them
             # as runtime values, using runtime parameters makes the tool throw an internal critical error ("replace not found" error)
             # Scratchgmod test: need "http" (or "https"), the hostname (+ port)
-            if not self.config["menu_url"]:
+            if "menu_url" not in self.config.keys():
                 jbrowse_menu_url = "https://{hostname}/sp/{genus_sp}/feature/{Genus}/{species}/{id}".format(hostname=self.config["hostname"], genus_sp=self.genus_species, Genus=self.genus_uppercase, species=self.species, id="{id}")
             else:
                 jbrowse_menu_url = self.config["menu_url"]