Workflow v2

speciesData.py

@@ -39,11 +39,11 @@ class SpeciesData:
         if parameters_dictionary["data"]["genome_version"] == "":
             self.genome_version = "1.0"
         else:
-            self.genome_version = parameters_dictionary["data"]["genome_version"]
+            self.genome_version = str(parameters_dictionary["data"]["genome_version"])
         if parameters_dictionary["data"]["ogs_version"] == "":
             self.ogs_version = "1.0"
         else:
-            self.ogs_version = parameters_dictionary["data"]["ogs_version"]
+            self.ogs_version = str(parameters_dictionary["data"]["ogs_version"])
 
         # TODO: catch blocks if key is absent in input
         self.genome_path = parameters_dictionary["data"]["genome_path"]
@@ -59,7+59,7 @@
         self.genus_uppercase = self.genus[0].upper() + self.genus[1:]
         self.chado_species_name = "{0} {1}".format(self.species, self.sex)
         self.full_name = ' '.join(utilities.filter_empty_not_empty_items([self.genus_uppercase, self.species, self.strain, self.sex])["not_empty"])
         self.full_name = self.full_name.replace("__", "_").replace("_ ", "_").replace(" _", "_")
         if self.full_name.endswith("_") or self.full_name.endswith(" "):
             self.full_name = self.full_name[0:-2]