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Created with Raphaël 2.2.09Feb8327Jan2630Nov254318Oct149Sep726Aug25241930Jul29262322330Jun28108432131May3028272524212019181716151412111087654330Apr2721201514131282129Mar252322191811109122Feb1918161154229Jan28211918141317Dec1613Nov648Oct617Sep14109410Aug31Jul2Jun26May9Apr27Mar25131296527Feb25241811feat: Add histories creation (one per organism) and add arguments parsingrefactor: Change parent class, begin cleaning unnecessary code from parent class and methodsfeat: Add workflow parameters as galaxy inputsfix: jinja2 workflow and job file (workflow inputs) templatestest: Add class to run organisms' workflows in the GGA orthology galaxy instancefix: newicks archive directory pathlog: Print log on newicks archive copy successfeat: Finalize data retrieval step for the GGA orthology modulefix: Add os importfix: Add nginx uwsgi conf for galaxyAdd script to copy species datasets and newick trees archive to orthology src_data directory treeMove function to create directory trees to utilities.pyRemove useless argRefactor codeRemove double item in docker-compose templateFix orthology src_data dir tree creation (not recursive)Fix orthology src_data dir tree creation (not recursive)Fix orthology src_data dir tree creation (not recursive)Add orthology init (create compose file and deploy stack)Add orthology docker-compose j2 templateAdd planemo to requirementsRollback cleanup script to not delete file count fileMerge branch 'dev' into 'master'v2.4.0v2.4.0Merge branch 'add_citrus_protein' into 'dev'Add citrus sinensis peptide fasta fileAdd citrus sinensis peptide fasta fileUpdate docs filenamev2.3.0v2.3.0Merge branch 'dev' into 'master'Merge branch 'developper_documentation' into 'dev'dev_before_reba…dev_before_rebase_preserve_merges_onto_masterUpdate README and docsMerge branch 'https_without_authelia' into 'master'v2.2.0v2.2.0Update contributorsFix utilities jbrowse_links_dictFix utilities jbrowse_links_dictAdd logging info for https without autheliaFix templates https and authelia conditionsFix utilities.pyFix utilities.pyFix genus species docker-compose template for jbrowseBASE_URL_PROTO as condition
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