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Created with Raphaël 2.2.015Feb1498327Jan2630Nov254318Oct149Sep726Aug25241930Jul29262322330Jun28108432131May3028272524212019181716151412111087654330Apr2721201514131282129Mar252322191811109122Feb1918161154229Jan28211918141317Dec1613Nov648Oct617Sep14109410Aug31Jul2Jun26May9Apr27Mar25131296527Feb25241811feat: Add methods to load Orthofinder data (newick trees archives)refactor: Delete and recreate histories in case of multiple histories returnfix: Delete history after IDs creation to prevent multiple histories with the same name co-existingfix: Delete history after IDs creation to prevent multiple histories with the same name co-existingfix: Indentationfix: workflow ogs analysis id parameterfix: planemo run history name argument nametest: Fix filepaths from parameters dictionarytest: Check parameters dictionarytest: Attempt fix for history idtest: Attempt fix for history idtest: Attempt fix for history idtest: Attempt fix for history idtest: Add config to class inittest: Re order inittest: Add --very-verbose arg for namespacetest: planemo run workflow for orthology datafeat: Add histories creation (one per organism) and add arguments parsingrefactor: Change parent class, begin cleaning unnecessary code from parent class and methodsfeat: Add workflow parameters as galaxy inputsfix: jinja2 workflow and job file (workflow inputs) templatestest: Add class to run organisms' workflows in the GGA orthology galaxy instancefix: newicks archive directory pathlog: Print log on newicks archive copy successfeat: Finalize data retrieval step for the GGA orthology modulefix: Add os importfix: Add nginx uwsgi conf for galaxyAdd script to copy species datasets and newick trees archive to orthology src_data directory treeMove function to create directory trees to utilities.pyRemove useless argRefactor codeRemove double item in docker-compose templateFix orthology src_data dir tree creation (not recursive)Fix orthology src_data dir tree creation (not recursive)Fix orthology src_data dir tree creation (not recursive)Add orthology init (create compose file and deploy stack)Add orthology docker-compose j2 templateAdd planemo to requirementsRollback cleanup script to not delete file count fileMerge branch 'dev' into 'master'v2.4.0v2.4.0
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