Skip to content
Snippets Groups Projects
Select Git revision
  • add_workflows
  • chmod_src_data
  • dev protected
  • dev_20221102_before_rebase protected
  • dev_before_rebase_preserve_merges_onto_master protected
  • dev_gpu
  • docker_tools
  • elasticsearch-cross-site
  • fix_empty_strain_sex
  • interpro_blast
  • master default protected
  • nested_yaml_input
  • orthology_planemo
  • packaging
  • refactor_blast_interproscan_workflow
  • rnaseq-jbrowse-tracks
  • v2.5.0 protected
  • v2.4.0 protected
  • v2.3.0 protected
  • v2.2.0 protected
  • v2.1.0 protected
  • v2.1.0-rc.1 protected
  • v2.0.2 protected
  • v2.0.1 protected
  • v2.0.0 protected
  • v1.0.2 protected
  • v1.0.1 protected
  • v1.0.0 protected
28 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.031May3028272524212019181716151412111087654330Apr2721201514131282129Mar252322191811109122Feb1918161154229Jan28211918141317Dec1613Nov648Oct617Sep14109410Aug31Jul2Jun26May9Apr27Mar25131296527Feb25241811Change version to chado load tools for interproscan and blast to 2.3.4+galaxy0 (was 2.3.6+galaxy0 for some)interpro_blastinterpro_blastMerge branch 'interpro_blast' of gitlab.sb-roscoff.fr:abims/e-infra/gga_load_data into interpro_blastUpdate workflows (remove sync from blast/interproscan + index track), restore correct dataset orderingMinor fixAdd GALAXY_DEFAULT_ADMIN_KEY to galaxy service env variablefix replace workflow values. Add time sleep before sync analysis. Change full_namefix time_sleep and chado_species_name. Change common_name for orgfix time_sleep and common_name for org. Change dataset_prefixfix get_datasetsfix instance_urlfix configfix library_idChange verbosityfix get_history(). Change verbosityminor fixfix get_historyMerge branch 'contig_prefix' into 'dev'v2.1.0-rc.1v2.1.0-rc.1fix jbrowse_links separatorRename methodsRefactor run_wf (WIP)Refactor run_wf (WIP). Create generic class runWorkflow, and child class runWorkflowJbrowseCreate utilities_bioblend.py. Refactor run_wf (WIP).Refactor run_wf. Fix linting errors and warnings.Refactor run_wf (WIP)Refactor run_wf (WIP)add check_param_not_emptyWorkflow datasets ordering, removed tripal synchronize tool call for genome and pgs analysesMerge branch 'check_config_param' into 'dev'Merge remote-tracking branch 'origin/check_config_param' into check_config_paramREQUIRED_PARAMETERS variable added to constants.pyThrow a critical error while parsing the supplied config file when a parameter is not configured or configured incorrectly (empty value) in the config fileWIP: Check required config param are not emptyrun_wf (WIP)Update comment on the config filefix typosfix typosSet data file and dataset name as constants. Refactor run_wf (WIP)add phaeoexplorer_constants.py. Add constants. Add SpeciesData attributes. Update run_tool_and_download_single_output_dataset(). Move install_repository_revision() to utilities.py. Refactor run_wf (WIP)remove useless performed_by paramadd jbrowse_links in species compose template
Loading