Skip to content
Snippets Groups Projects
Select Git revision
  • add_workflows
  • chmod_src_data
  • dev protected
  • dev_20221102_before_rebase protected
  • dev_before_rebase_preserve_merges_onto_master protected
  • dev_gpu
  • docker_tools
  • elasticsearch-cross-site
  • fix_empty_strain_sex
  • interpro_blast
  • master default protected
  • nested_yaml_input
  • orthology_planemo
  • packaging
  • refactor_blast_interproscan_workflow
  • rnaseq-jbrowse-tracks
  • v2.5.0 protected
  • v2.4.0 protected
  • v2.3.0 protected
  • v2.2.0 protected
  • v2.1.0 protected
  • v2.1.0-rc.1 protected
  • v2.0.2 protected
  • v2.0.1 protected
  • v2.0.0 protected
  • v1.0.2 protected
  • v1.0.1 protected
  • v1.0.0 protected
28 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.02Mar121Feb5Jan2Nov11Oct24Aug2398432128Jul26251928Jun9732131May241026Apr2514127531Mar2228Feb17151498327Jan2630Nov254318Oct149Sep726Aug25241930Jul29262322330Jun28108432131May3028272524212019181716151412111087654330Apr2721201514131282129Mar252322191811109122Febdebug: Rollback to 0.14.0 to find another solutiontest: Use API key for connectionfix: Wait for dataset (require bioblend version upgrade)fix: Increase sleep after tool run to prevent datasets state errordebug: Remove debug logdebug: Verify list of hda ids is correctdebug: Remove debugdebug: Check output dict contentfix: Syntax and output dict empty when running toolsrefactor: Add setup.py for packaging gga_load_data modulespackagingpackagingrefactor: Packaging of gga_load_data python modulesadd other possible stdoutdocker_toolsdocker_toolsstate as str and not intfix: Newlinetest: Create elasticsearch config file to be able to create snapshots after container starttest: Create elasticsearch config file to be able to create snapshots after container starttest: Add snapshot repo at container startuptest: Add snapshot repo at container startuptest: Add snapshot repo at container startuptest: Add snapshot repo at container startuptest: Add snapshot repo at container startupMerge branch 'dev'v2.5.0 masterv2.5.0 masterfix: Clone abims-sbr tripal linkout moduleorthology_planemoorthology_planemotest: Update input for orthologyfix: Template var namernaseq-jbrowse-…rnaseq-jbrowse-tracksfix: Match constants, template vars and render vars names and valuesrefactor: Store job files in organisms dirrefactor: Update constants and remove unused varsfeat: Add display name and unique ID to RNAseq tracks workflowfix: Remove unused vars in templatingfix: Exit when file cannot be uploaded to historyfix: Get lib folders dict from parent class methodfeat: Add step to add organisms to jbrowse container in workflow (add rnaseq tracks)factorize install_individual_tools methoddev dev_2022110…dev dev_20221102_before_rebaserename classhomogenize hda_id default valu with other gga_run_wf scriptsremove api_key from RunWorkflowAddTrackToJbrowse class initRemove unused constants. Factorize code from gga_run_wf scripts (add methods get_library_folders_id_dict, add_dataset_from_library). Script gga_run_wf_add_rnaseq: get api_key from config ; use methods set_galaxy_instance and set_history ; move planemo template to templates dir ; create a dedicated dir for planemo jobs yml files ; get workflow file from constants ; update wf.ga with bam track custom configs (v2)test: Use utilities method to get historyfix: Add identifiers