dynamic go reports menu

templates/page--front.tpl.php

@@ -126,13 +126,19 @@
                             </li>
                         <?php endif; ?>
                         <?php if (getenv('ENABLE_GO')): ?>
-                            <?php
-                                if (getenv('ENABLE_GO') == "1")
-                                    $url = '/organism/';
-                                else
-                                    $url = getenv('ENABLE_GO');
-                            ?>
-                            <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].$url; ?>">GO Report</a></li>
+                            <?php if (count($page['organisms']) > 1): ?>
+                            <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46">
+                                GO Reports
+                                <ul class="sub-menu">
+                            <?php endif; ?>
+                            <?php foreach ($page['organisms'] as $org_id => $org): ?>
+                              <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php $GLOBALS['base_url']."/organism/".str_replace(' ', '-', $org->genus)."/".str_replace(' ', '-', $org->species)."?pane=GO"; ?>"><?php echo $org->genus $org->species ?></a></li>
+                            <?php endforeach; ?>
+                            <?php if (count($page['organisms']) > 1): ?>
+                                </ul>
+                            </li>
+                            <?php endif; ?>
+                            <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].$url; ?>">GO Reports</a></li>
                         <?php endif; ?>
                         <?php if (getenv('ENABLE_BLAST')): ?>
                             <?php