add GO and Download pages

README.md

@@ -19,6 +19,8 @@ services:
       ENABLE_BLAST: 1 # 1 to add links to blast form, some/url to specify the path (relative to tripal BASE_URL_PATH), 0 to disable it
       ENABLE_JBROWSE: 1 # 1 to add links to jbrowse, jbrowse?data=xxx to specify the path (relative to tripal BASE_URL_PATH), 0 to disable it
       ENABLE_APOLLO: 1 # 1 to add links to apollo, some/url to specify the path (relative to tripal BASE_URL_PATH), 0 to disable it
+      ENABLE_DOWNLOAD: 1 # 1 to add links to download dir, some/url to specify the path (relative to tripal BASE_URL_PATH), 0 to disable it
+      ENABLE_GO: 1 # 1 to add links to GO summary, some/url to specify the path (relative to tripal BASE_URL_PATH), 0 to disable it
       JBROWSE_LINKS: "SFRU_RICE>rice" # correspondance between contig name prefix and jbrowse dataset id, example: "SFRU_RICE>rice_1;SFRU_CORN>corn_2"
       # By default APOLLO_LINKS == JBROWSE_LINKS
       APOLLO_LINKS: "SFRU_RICE>rice" # correspondance between contig name prefix and apollo dataset id, example: "SFRU_RICE>rice_1;SFRU_CORN>corn_2"

templates/page.tpl.php

@@ -110,6 +110,15 @@
                                 <!--li id="menu-item-44" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-44"><a href="<?php echo $GLOBALS['base_url']; ?>/elastic_search">Advanced search</a></li-->
                             </ul>
                         </li>
+                        <?php if (getenv('ENABLE_GO')): ?>
+                            <?php
+                                if (getenv('ENABLE_GO') == "1")
+                                    $url = '/organism/';
+                                else
+                                    $url = getenv('ENABLE_GO');
+                            ?>
+                            <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].$url; ?>">GO Report</a>
+                        <?php endif; ?>
                         <?php if (getenv('ENABLE_BLAST')): ?>
                             <?php
                                 if (getenv('ENABLE_BLAST') == "1")
@@ -137,6 +146,15 @@
                             ?>
                             <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].$url; ?>">Apollo</a>
                         <?php endif; ?>
+                        <?php if (getenv('ENABLE_DOWNLOAD')): ?>
+                            <?php
+                                if (getenv('ENABLE_DOWNLOAD') == "1")
+                                    $url = '/download';
+                                else
+                                    $url = getenv('ENABLE_DOWNLOAD');
+                            ?>
+                            <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].$url; ?>">Download</a>
+                        <?php endif; ?>
                         <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="http://bipaa.genouest.org/is/">BIPAA</a>
                             <ul class="sub-menu">
                                 <li id="menu-item-43" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-43"><a href="https://bipaa.genouest.org/is/aphidbase/">AphidBase</a></li>