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Commit 9213ade3 authored by Loraine Guéguen's avatar Loraine Guéguen
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add display filter on trinotate

parent 734e2c48
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...@@ -371,7 +371,7 @@ ...@@ -371,7 +371,7 @@
if ($an->human_kind == 'functional') { if ($an->human_kind == 'functional') {
print "Functional annotation: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num."\">".$an->name."</a>"; print "Functional annotation: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num."\">".$an->name."</a>";
if ((getenv('ENABLE_GO') && (preg_match('/.*Blast2GO.*/i', $an->name)) || (preg_match('/.*trinotate.*/i', $an->name))) { if (getenv('ENABLE_GO') && preg_match('/.*Blast2GO.*/i', $an->name, $m)) {
print "[<a href=\"".$GLOBALS['base_url']."/organism/".str_replace(' ', '-', $page['organisms'][$org_id]->genus)."/".str_replace(' ', '-', $page['organisms'][$org_id]->species)."?pane=GO\">Report</a>]"; print "[<a href=\"".$GLOBALS['base_url']."/organism/".str_replace(' ', '-', $page['organisms'][$org_id]->genus)."/".str_replace(' ', '-', $page['organisms'][$org_id]->species)."?pane=GO\">Report</a>]";
} }
} }
...@@ -421,7 +421,7 @@ ...@@ -421,7 +421,7 @@
if ($an2->human_kind == 'functional') { if ($an2->human_kind == 'functional') {
print "Functional annotation: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num2."\">".$an2->name."</a>"; print "Functional annotation: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num2."\">".$an2->name."</a>";
if ((getenv('ENABLE_GO') && (preg_match('/.*Blast2GO.*/i', $an2->name)) || (preg_match('/.*trinotate.*/i', $an2->name))) { if (getenv('ENABLE_GO') && preg_match('/.*Blast2GO.*/i', $an2->name, $m)) {
print "[<a href=\"".$GLOBALS['base_url']."/organism/".str_replace(' ', '-', $page['organisms'][$org_id]->genus)."/".str_replace(' ', '-', $page['organisms'][$org_id]->species)."?pane=GO\">Report</a>]"; print "[<a href=\"".$GLOBALS['base_url']."/organism/".str_replace(' ', '-', $page['organisms'][$org_id]->genus)."/".str_replace(' ', '-', $page['organisms'][$org_id]->species)."?pane=GO\">Report</a>]";
} }
} }
...@@ -464,7 +464,7 @@ ...@@ -464,7 +464,7 @@
<div class="tripal-analysis-blast-teaser-title tripal-teaser-title"> <div class="tripal-analysis-blast-teaser-title tripal-teaser-title">
<p class="data_highlight"><?php print "<a href=\"".$GLOBALS['base_url']."/analysis/".$an_num3."\">".$an3->name."</a>"; ?> <p class="data_highlight"><?php print "<a href=\"".$GLOBALS['base_url']."/analysis/".$an_num3."\">".$an3->name."</a>"; ?>
<?php <?php
if ((getenv('ENABLE_GO') && preg_match('/.*Blast2GO.*/i', $an3->name)) || (getenv('ENABLE_GO') && preg_match('/.*trinotate.*/i', $an3->name))) { if (getenv('ENABLE_GO') && preg_match('/.*Blast2GO.*/i', $an3->name, $m)) {
print "[<a href=\"".$GLOBALS['base_url']."/organism/".str_replace(' ', '-', $page['organisms'][$org_id]->genus)."/".str_replace(' ', '-', $page['organisms'][$org_id]->species)."?pane=GO\">Report</a>]"; print "[<a href=\"".$GLOBALS['base_url']."/organism/".str_replace(' ', '-', $page['organisms'][$org_id]->genus)."/".str_replace(' ', '-', $page['organisms'][$org_id]->species)."?pane=GO\">Report</a>]";
} }
?></p> ?></p>
......
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