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Commit eb80abfd authored by Anthony Bretaudeau's avatar Anthony Bretaudeau
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support absolute apollo url

parent 90927f27
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1 merge request!1Merge upstream
......@@ -165,14 +165,18 @@
<?php endif; ?>
<?php if (getenv('ENABLE_APOLLO')): ?>
<?php
if (getenv('ENABLE_APOLLO') == "1")
$url = '/apollo';
else
if (getenv('ENABLE_APOLLO') == "1") {
$url = $GLOBALS['base_url'] . '/apollo';
$url_report = $GLOBALS['base_url'] . '/apollo_report';
}
else {
$url = getenv('ENABLE_APOLLO');
$url_report = $url . 'report';
}
?>
<li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].$url; ?>">Apollo</a>
<li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $url; ?>">Apollo</a>
<ul class="sub-menu">
<li id="menu-item-43" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-43"><a href="<?php echo $GLOBALS['base_url'].'/apollo_report'; ?>">Annotation report</a></li>
<li id="menu-item-43" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-43"><a href="<?php echo $url_report; ?>">Annotation report</a></li>
</ul>
</li>
<?php endif; ?>
......
......@@ -176,14 +176,18 @@ if (isset($node) && $node->type == "chado_feature") {
<?php endif; ?>
<?php if (getenv('ENABLE_APOLLO')): ?>
<?php
if (getenv('ENABLE_APOLLO') == "1")
$url = '/apollo';
else
if (getenv('ENABLE_APOLLO') == "1") {
$url = $GLOBALS['base_url'] . '/apollo';
$url_report = $GLOBALS['base_url'] . '/apollo_report';
}
else {
$url = getenv('ENABLE_APOLLO');
$url_report = $url . 'report';
}
?>
<li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].$url; ?>">Apollo</a>
<li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $url; ?>">Apollo</a>
<ul class="sub-menu">
<li id="menu-item-43" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-43"><a href="<?php echo $GLOBALS['base_url'].'/apollo_report'; ?>">Annotation report</a></li>
<li id="menu-item-43" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-43"><a href="<?php echo $url_report; ?>">Annotation report</a></li>
</ul>
</li>
<?php endif; ?>
......
......@@ -153,7 +153,7 @@ if(count($alignments) > 0){ ?>
if (!$found_link) {
if (getenv('ENABLE_APOLLO') == "1")
$url = '/apollo/annotator/loadLink?';
$url = $GLOBALS['base_url'] . '/apollo/annotator/loadLink?';
else {
// Some url was given
$url = getenv('ENABLE_APOLLO');
......@@ -164,7 +164,7 @@ if(count($alignments) > 0){ ?>
}
}
$feature_loc .= " &nbsp;&nbsp; View in <a href='".$GLOBALS['base_url'].$url."loc=".$alignment->name."%3A".($alignment->fmin + 1)."..".$alignment->fmax."'>Apollo</a>";
$feature_loc .= " &nbsp;&nbsp; View in <a href='".$url."loc=".$alignment->name."%3A".($alignment->fmin + 1)."..".$alignment->fmax."'>Apollo</a>";
}
$rows[] = array(
......
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