phaeoexplorer-change_transcript_fasta_header.sh.bak

#!/usr/bin/env bash

INFILE=$1
OUTFILE=tmpfile
/home/fr2424/sib/alebars/gga_load_data/ext_scripts/common-stringSubsitute.py -i $INFILE -o $OUTFILE -p '^>\d+ mRNA' -r '>mRNA'
mv $OUTFILE $INFILE
echo "'>[0-9]+ mRNA' replaced by '>mRNA' in $1"