organisms.yml.j2

{{ name }}:
  description:
    genus: {{ genus }}
    species: {{ species }}
    sex: {{ sex }}
    strain: {{ strain }}
    common_name: {{ common_name }}
    origin: {{ origin }}
  data:
    genome_path: {{ genome_path }}
    transcripts_path: {{ transcripts_path }}
    proteins_path: {{ proteins_path }}
    gff_path: {{ gff_path }} # Mandatory!
    interpro_path: {{ interpro_path }}
    orthofinder_path: {{ orthofinder_path }}
    blastp_path: {{ blastp_path }}
    blastx_path: {{ blastx_path }}
    genome_version: {{ genome_version }}
    ogs_version: {{ ogs_version }}
    performed_by: {{ performed_by }}
  services:
    blast: {{ blast }}