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Commit 14eac2c8 authored by Loraine Gueguen's avatar Loraine Gueguen
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comment checking job state

parent e9abe404
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2 merge requests!10Release 2.0,!9Release 2.0 (merge dev to master)
......@@ -206,25 +206,25 @@ class LoadData(speciesData.SpeciesData):
time.sleep(1)
# Wait for uploads to complete
logging.info("Waiting for import jobs to finish... please wait")
# Checking job state (only necessary if ran using SLURM)
while True:
try:
# "C" state means the job is completed, no need to wait for it
ret = subprocess.check_output("squeue | grep -v \"C debug\" | grep -v \"JOBID\" || true",
shell=True)
if not len(ret):
break
time.sleep(3)
except subprocess.CalledProcessError as inst:
if inst.returncode == 153: # queue is empty
break
else:
raise
time.sleep(10)
# # Wait for uploads to complete
# logging.info("Waiting for import jobs to finish... please wait")
#
# # Checking job state (only necessary if ran using SLURM)
# while True:
# try:
# # "C" state means the job is completed, no need to wait for it
# ret = subprocess.check_output("squeue | grep -v \"C debug\" | grep -v \"JOBID\" || true",
# shell=True)
# if not len(ret):
# break
# time.sleep(3)
# except subprocess.CalledProcessError as inst:
# if inst.returncode == 153: # queue is empty
# break
# else:
# raise
#
# time.sleep(10)
# Batch renaming --> Throws a critical error at the moment
# logging.info("Import finished, now renaming datasets with pretty names")
......
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