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Commit 21d9a1c1 authored by Arthur Le Bars's avatar Arthur Le Bars Committed by Loraine Gueguen
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hda_id get error log

parent 4b96b2e5
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2 merge requests!47v2.5.0,!34WIP: blast and interpro workflow
...@@ -38,7 +38,11 @@ class OrgWorkflowParamBlastInterproscan(gga_run_workflow_phaeo.OrgWorkflowParam) ...@@ -38,7 +38,11 @@ class OrgWorkflowParamBlastInterproscan(gga_run_workflow_phaeo.OrgWorkflowParam)
self.history_id, self.history_id,
self.instance, self.instance,
self.blastp_analysis_id, self.blastp_analysis_id,
self.blastp_hda_id] self.blastp_hda_id,
self.blastx_analysis_id,
self.blastx_hda_id,
self.interpro_analysis_id,
self.interproscan_hda_id]
utilities_bioblend.check_wf_param(self.full_name, params) utilities_bioblend.check_wf_param(self.full_name, params)
...@@ -300,7 +304,6 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow): ...@@ -300,7 +304,6 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow):
blastx_ldda_id = ldda_id blastx_ldda_id = ldda_id
hda_list = self.instance.datasets.get_datasets() hda_list = self.instance.datasets.get_datasets()
print(hda_list)
# Finding datasets in history (matching datasets names) # Finding datasets in history (matching datasets names)
for hda in hda_list: for hda in hda_list:
hda_name = hda["name"] hda_name = hda["name"]
...@@ -344,8 +347,11 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow): ...@@ -344,8 +347,11 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow):
logging.debug("blastp file not found in library (exit code: {0})".format(exc)) logging.debug("blastp file not found in library (exit code: {0})".format(exc))
self.blastp_hda_id = blastp_hda_id self.blastp_hda_id = blastp_hda_id
print(self.blastp_hda_id)
self.blastx_hda_id = blastx_hda_id self.blastx_hda_id = blastx_hda_id
print(self.blastx_hda_id)
self.interproscan_hda_id = interproscan_hda_id self.interproscan_hda_id = interproscan_hda_id
print(self.interproscan_hda_id)
def prepare_history_and_get_wf_param(sp_dict_list, main_dir, config): def prepare_history_and_get_wf_param(sp_dict_list, main_dir, config):
......
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