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Commit 311f553a authored by Loraine Gueguen's avatar Loraine Gueguen
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fix filepath for upload_from_galaxy_fs()

parent 7ca737a5
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2 merge requests!10Release 2.0,!9Release 2.0 (merge dev to master)
...@@ -183,11 +183,11 @@ class LoadData(speciesData.SpeciesData): ...@@ -183,11 +183,11 @@ class LoadData(speciesData.SpeciesData):
logging.info("Skipping useless file '%s'" % single_file) logging.info("Skipping useless file '%s'" % single_file)
continue continue
single_file_path=os.path.join(CONTAINER_DATA_DIR_ROOT,single_file) single_file_path_in_container=os.path.join(CONTAINER_DATA_DIR_ROOT,os.path.single_file)
logging.info("Adding file '%s' with type '%s' and name '%s'" % (single_file, ftype, clean_name)) logging.info("Adding file '%s' with type '%s' and name '%s'" % (single_file_path_in_container, ftype, clean_name))
datasets = prj_lib.upload_from_galaxy_fs( datasets = prj_lib.upload_from_galaxy_fs(
single_file_path, single_file_path_in_container,
folder=folder, folder=folder,
link_data_only='link_to_files', link_data_only='link_to_files',
file_type=ftype, file_type=ftype,
......
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