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Commit 3cd606a3 authored by Arthur Le Bars's avatar Arthur Le Bars
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hda_id get error log

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2 merge requests!47v2.5.0,!34WIP: blast and interpro workflow
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constants_phaeo.py
+ 2
− 2
View file @ 3cd606a3
......@@ -41,7 +41,7 @@ WF_LOAD_GFF_JB_2_ORG_STEP_POPULATE_VIEWS = "15"
WF_LOAD_GFF_JB_2_ORG_STEP_INDEX = "16"
# Workflow to load blastp, blastx and interproscan into chado and tripal
WF_BLAST_INTERPRO_1_ORG_FILE = "Galaxy-Workflow-load_blast_interproscan_results_1org_v1.ga"
WF_BLAST_INTERPRO_1_ORG_FILE = "Galaxy-Workflow-load_blast_interproscan_results_1org_v2.ga"
WF_BLAST_INTERPRO_1_ORG_INPUT_BLASTP = "0"
WF_BLAST_INTERPRO_1_ORG_INPUT_BLASTX = "1"
WF_BLAST_INTERPRO_1_ORG_INPUT_INTERPRO = "2"
......@@ -54,7 +54,7 @@ WF_BLAST_INTERPRO_1_ORG_SYNC_BLASTP_ANALYSIS = "8"
WF_BLAST_INTERPRO_1_ORG_SYNC_BLASTX_ANALYSIS = "9"
WF_BLAST_INTERPRO_1_ORG_SYNC_INTERPRO_ANALYSIS = "10"
WF_BLAST_INTERPRO_2_ORG_FILE = "Galaxy-Workflow-load_blast_interproscan_results_2org_v1.ga"
WF_BLAST_INTERPRO_2_ORG_FILE = "Galaxy-Workflow-load_blast_interproscan_results_2org_v2.ga"
WF_BLAST_INTERPRO_2_ORG_INPUT_BLASTP_ORG1 = "0"
WF_BLAST_INTERPRO_2_ORG_INPUT_BLASTP_ORG2 = "1"
WF_BLAST_INTERPRO_2_ORG_INPUT_BLASTX_ORG1 = "2"
......
gga_run_workflow_phaeo_blast_interpro.py
+ 0
− 9
View file @ 3cd606a3
......@@ -310,16 +310,10 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow):
hda_id = hda["id"]
if hda_name == self.blastp_filename:
blastp_hda_id = hda_id
print("blastp_hda_name: %s" % hda_name)
print("blastp_hda_id: %s" % hda_id)
if hda_name == self.blastx_filename:
blastx_hda_id = hda_id
print("blastx_hda_name: %s" % hda_name)
print("blastx_hda_id: %s" % hda_id)
if hda_name == self.interpro_filename:
interproscan_hda_id = hda_id
print("interpro_hda_name: %s" % hda_name)
print("interpro_hda_id: %s" % hda_id)
# Import each dataset into history if it is not imported
logging.debug("Uploading datasets into history %s" % self.history_id)
......@@ -347,11 +341,8 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow):
logging.debug("blastp file not found in library (exit code: {0})".format(exc))
self.blastp_hda_id = blastp_hda_id
print(self.blastp_hda_id)
self.blastx_hda_id = blastx_hda_id
print(self.blastx_hda_id)
self.interproscan_hda_id = interproscan_hda_id
print(self.interproscan_hda_id)
def prepare_history_and_get_wf_param(sp_dict_list, main_dir, config):
......
workflows_phaeoexplorer/Galaxy-Workflow-load_blast_interproscan_results_1org_v2.ga 0 → 100644
+ 599
− 0
View file @ 3cd606a3
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workflows_phaeoexplorer/Galaxy-Workflow-load_blast_interproscan_results_2org_v2.ga 0 → 100644
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View file @ 3cd606a3
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