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abims
e-infra
gga_load_data
Commits
50c5a7f6
Commit
50c5a7f6
authored
3 years ago
by
Arthur Le Bars
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added workflow path from constants_phaeo.py for single organism instances
parent
3cad9a5d
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!47
v2.5.0
,
!34
WIP: blast and interpro workflow
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gga_run_workflow_phaeo_blast_interpro.py
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gga_run_workflow_phaeo_blast_interpro.py
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50c5a7f6
...
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@@ -496,7 +496,7 @@ if __name__ == "__main__":
# Set workflow path (1 organism)
workflow_path
=
os
.
path
.
join
(
os
.
path
.
abspath
(
script_dir
),
constants_phaeo
.
WORKFLOWS_PATH
,
constants_phaeo
.
WF_
LOAD_GFF_JB
_1_ORG_FILE
)
constants_phaeo
.
WF_
BLAST_INTERPRO
_1_ORG_FILE
)
# Check if the versions of tools specified in the workflow are installed in galaxy
utilities_bioblend
.
install_workflow_tools
(
workflow_path
=
workflow_path
,
instance
=
org_wf_param
.
instance
)
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