Refactor run_wf (WIP)

constants_phaeo.py

@@ -40,9 +40,6 @@ WF_LOAD_GFF_JB_2_ORG_STEP_FEATURE_SYNC_ORG2 = "14"
 WF_LOAD_GFF_JB_2_ORG_STEP_POPULATE_VIEWS = "15"
 WF_LOAD_GFF_JB_2_ORG_STEP_INDEX = "16"
 
-WORKFLOW_BLAST = "blast"
-WORKFLOW_INTERPRO = "interpro"
-WORKFLOW_VALID_TYPES = [WF_LOAD_GFF_JB, WORKFLOW_BLAST, WORKFLOW_INTERPRO]
 
 ### Galaxy tools
 

gga_run_workflow_phaeo_jbrowse.py

@@ -347,10 +347,6 @@ if __name__ == "__main__":
                         type=str,
                         help="Where the stack containers will be located, defaults to working directory")
 
-    parser.add_argument("--workflow", "-w",
-                        type=str,
-                        help="Worfklow to run. Available options: load_fasta_gff_jbrowse, blast, interpro")
-
     args = parser.parse_args()
 
     bioblend_logger = logging.getLogger("bioblend")