debug logging to display analysis IDs used by galaxy tools (blast interpro workflow)

gga_run_workflow_phaeo_blast_interpro.py

@@ -504,6 +504,14 @@ if __name__ == "__main__":
             # Set the workflow parameters (individual tools runtime parameters in the workflow)
             workflow_parameters = dict()
 
+            # IMPORTANT:
+            # There seems to be an issue with the synchronize analysis tool in the workflow
+            # It affects the first analysis found (genome analysis) instead of the provided ones below
+            # Use --verbose argument to get debug logging to display the analysis IDs
+            logging.debug("Blastp analysis id for organism 1 ({0}): {1}".format(genus_species, org_wf_param.blastp_analysis_id))
+            logging.debug("Blastx analysis id for organism 1 ({0}): {1}".format(genus_species, org_wf_param.blastp_analysis_id))
+            logging.debug("InterProScan analysis id for organism 1 ({0}): {1}".format(genus_species , org_wf_param.interpro_analysis_id))
+
             # Input files have no parameters (they are set via assigning the hda IDs in the datamap parameter of the bioblend method)
             workflow_parameters[constants_phaeo.WF_BLAST_INTERPRO_1_ORG_INPUT_BLASTP] = {}
             workflow_parameters[constants_phaeo.WF_BLAST_INTERPRO_1_ORG_INPUT_BLASTX] = {}
@@ -519,6 +527,7 @@ if __name__ == "__main__":
                 "analysis_id": org_wf_param.interpro_analysis_id}
             workflow_parameters[constants_phaeo.WF_BLAST_INTERPRO_1_ORG_POPULATE_MAT_VIEWS] = {}
             workflow_parameters[constants_phaeo.WF_BLAST_INTERPRO_1_ORG_INDEX_TRIPAL_DATA] = {}
+
             workflow_parameters[constants_phaeo.WF_BLAST_INTERPRO_1_ORG_SYNC_BLASTP_ANALYSIS] = {
                 "analysis_id": org_wf_param.blastp_analysis_id
             }
@@ -585,6 +594,17 @@ if __name__ == "__main__":
             # Set the workflow parameters (individual tools runtime parameters in the workflow)
             workflow_parameters = dict()
 
+            # IMPORTANT:
+            # There seems to be an issue with the synchronize analysis tool in the workflow
+            # It affects the first analysis found (genome analysis) instead of the provided ones below
+            # Use --verbose argument to get debug logging to display the analysis IDs
+            logging.debug("Blastp analysis id for organism 1 ({0}, {1}): {2}".format(genus_species, strain_sex_org1, sp_wf_param_org1.blastp_analysis_id))
+            logging.debug("Blastx analysis id for organism 1 ({0}, {1}): {2}".format(genus_species, strain_sex_org1, sp_wf_param_org1.blastp_analysis_id))
+            logging.debug("InterProScan analysis id for organism 1 ({0}, {1}): {2}".format(genus_species, strain_sex_org1, sp_wf_param_org1.interpro_analysis_id))
+            logging.debug("Blastp analysis id for organism 2 ({0}, {1}): {2}".format(genus_species, strain_sex_org2, sp_wf_param_org2.blastp_analysis_id))
+            logging.debug("Blastx analysis id for organism 2 ({0}, {1}): {2}".format(genus_species, strain_sex_org2, sp_wf_param_org2.blastp_analysis_id))
+            logging.debug("InterProScan analysis id for organism 2 ({0}, {1}): {2}".format(genus_species, strain_sex_org2, sp_wf_param_org2.interpro_analysis_id))
+            
             # Input files have no parameters (they are set via assigning the hda IDs in the datamap parameter of the bioblend method)
             workflow_parameters[constants_phaeo.WF_BLAST_INTERPRO_2_ORG_INPUT_BLASTP_ORG1] = {}
             workflow_parameters[constants_phaeo.WF_BLAST_INTERPRO_2_ORG_INPUT_BLASTP_ORG2] = {}