Add debug

gga_init.py

@@ -134,7 +134,7 @@ class DeploySpeciesStack(speciesData.SpeciesData):
                 galaxy_nginx_conf_file.truncate(0)
                 galaxy_nginx_conf_file.write(galaxy_nginx_conf_output)
         else:
-            logging.debug("galaxy_nginx.conf alredy exists")
+            logging.debug("galaxy_nginx.conf already exists")
 
         # Create the volumes (directory) of the species docker-compose file
         create_mounts(working_dir=".", main_dir=self.main_dir)

utilities.py

@@ -37,6 +37,7 @@ def parse_config(config_file):
 
     config_dict = load_yaml(config_file)
     if isinstance(config_dict, dict):
+        logging.debug("Config dictionary: {0}".format(config_dict))
         return config_dict
     else:
         logging.critical("Config yaml file is not a dictionary" % config_file)