debug get picture

gga_init.py

@@ -431,9 +431,9 @@ if __name__ == "__main__":
         deploy_stack_for_current_organism.make_compose_files()
         logging.info("Successfully generated the docker-compose files for %s %s", deploy_stack_for_current_organism.genus, deploy_stack_for_current_organism.species)
 
-    logging.info("Deploying stacks")
-    if args.force_traefik:
-        deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=True)
-    else:
-        deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=False)
-    logging.info("All stacks deployed for organisms in input file %s" % args.input)
+    # logging.info("Deploying stacks")
+    # if args.force_traefik:
+    #     deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=True)
+    # else:
+    #     deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=False)
+    # logging.info("All stacks deployed for organisms in input file %s" % args.input)

utilities.py

@@ -164,6 +164,8 @@ def get_sp_picture(sp_dict_list):
 
             sp_picture_dict[genus_species] = sp[constants.ORG_PARAM_DESC][constants.ORG_PARAM_DESC_PICTURE_PATH]
 
+    logging.debug("picture dict: %s" % sp_picture_dict)
+
     return sp_picture_dict
 
 def get_sp_jbrowse_links(org_list):