Move constants to file constants.py. Change config root to dict and update...
Move constants to file constants.py. Change config root to dict and update parse_config(). Change some config parameters name (galaxy_persist_data, tripal_banner_path, jbrowse_menu_url), update example config file and compose templates. Remove apollo config variables (webapollo_user, webapollo_password) in config file and in gspecies compose template, because apollo service not deployed here. Factorize parse_input() et parse_config(). Update description of scripts in main. Set default config file in scripts. Remove useless variable datasets_to_get in gga_get_data.py. Update README.md.
parent
14eac2c8
No related branches found
No related tags found
This commit is part of merge request !9. Comments created here will be created in the context of that merge request.
Showing
- README.md 13 additions, 15 deletionsREADME.md
- constants.py 53 additions, 0 deletionsconstants.py
- examples/config.yml 22 additions, 25 deletionsexamples/config.yml
- gga_get_data.py 40 additions, 47 deletionsgga_get_data.py
- gga_init.py 36 additions, 27 deletionsgga_init.py
- gga_load_data.py 22 additions, 24 deletionsgga_load_data.py
- run_workflow_phaeoexplorer.py 11 additions, 14 deletionsrun_workflow_phaeoexplorer.py
- speciesData.py 25 additions, 24 deletionsspeciesData.py
- templates/gspecies_compose.yml.j2 2 additions, 6 deletionstemplates/gspecies_compose.yml.j2
- templates/traefik_compose.yml.j2 1 addition, 1 deletiontemplates/traefik_compose.yml.j2
- utilities.py 31 additions, 37 deletionsutilities.py
Loading
Please register or sign in to comment