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Commit f86c515d authored by Loraine Gueguen's avatar Loraine Gueguen
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minor fix

parent 555e70de
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1 merge request!18Release v2.1.0
...@@ -129,7 +129,7 @@ class DeploySpeciesStack(speciesData.SpeciesData): ...@@ -129,7 +129,7 @@ class DeploySpeciesStack(speciesData.SpeciesData):
input_vars = {"genus": self.genus_lowercase, "Genus": self.genus_uppercase, "species": self.species, input_vars = {"genus": self.genus_lowercase, "Genus": self.genus_uppercase, "species": self.species,
"genus_species": self.genus_species, "genus_species_strain_sex": self.species_folder_name, "genus_species": self.genus_species, "genus_species_strain_sex": self.species_folder_name,
"genus_species_sex": "{0}_{1}_{2}".format(self.genus_lowercase, self.species_lower, self.sex), "genus_species_sex": "{0}_{1}_{2}".format(self.genus_lowercase, self.species_lower, self.sex),
"strain": self.strain, "sex": self.sex, "Genus_species": "{0} {1}".format(self.genus_uppercase, self.species_lower()), "strain": self.strain, "sex": self.sex, "Genus_species": "{0} {1}".format(self.genus_uppercase, self.species_lower),
"blast": self.blast, "go": self.go, "picture_path": self.picture_path} "blast": self.blast, "go": self.go, "picture_path": self.picture_path}
if (len(self.config.keys()) == 0): if (len(self.config.keys()) == 0):
logging.error("Empty config dictionary") logging.error("Empty config dictionary")
......
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