Commits · 081f190609bcac99f1df164cb532e176a718a94f · abims / e-infra / gga_load_data

Nov 13, 2020
- Explicit parameters and datamap for the run_workflow module, some changes for clarity · 081f1906
  Arthur Le Bars authored 4 years ago
  
  081f1906
Nov 06, 2020
- Sync with local repo · 33e6ccea
  Arthur Le Bars authored 4 years ago
  
  33e6ccea
Nov 04, 2020
- Merge into a local branch · 446c1e81
  Arthur Le Bars authored 4 years ago
  
  446c1e81
Oct 08, 2020
- Merge branch 'dev' of gitlab.sb-roscoff.fr:abims/e-infra/gga_load_data into dev · 2b707e8e
  Arthur Le Bars authored 4 years ago
  
  2b707e8e
- Deploy stacks and load data both working, only phaeoexplorer workflow script... · e434fd52
  Arthur Le Bars authored 4 years ago
```
Deploy stacks and load data both working, only phaeoexplorer workflow script to finish. Data loading done directly from the script (not calling the container script anymore). Also some polishing.
```
  e434fd52
Sep 17, 2020
- Update README.md with new script name · 8957b500
  Loraine Gueguen authored 4 years ago
  
  8957b500
Sep 14, 2020
- Refactor code. Remove deprecated code. · 2251ebcf
  gga authored 4 years ago
  
  2251ebcf
Sep 10, 2020
- Cleaning repo · cd8a980c
  Arthur Le Bars authored 4 years ago
  
  cd8a980c
- Divided into 3 separate scripts: deploy_stacks.py, load_data.py, run_workflow.py · 179451df
  Arthur Le Bars authored 4 years ago
  
  179451df
Sep 09, 2020
- Backup before dividing script · 48a124f6
  Arthur Le Bars authored 4 years ago
  
  48a124f6
Sep 04, 2020
- Deploy/load parts, docker deploy stacks fixes · 0ab13844
  Arthur Le Bars authored 4 years ago
  
  0ab13844
Aug 10, 2020
- Swarm functional version (wait for galaxy service to finish scanning /export... · 8fa6a46e
  Arthur Le Bars authored 4 years ago
```
Swarm functional version (wait for galaxy service to finish scanning /export before running the data loading + workflow script)
```
  8fa6a46e
Jul 31, 2020
- Swarm update · af06a5c7
  Arthur Le Bars authored 4 years ago
  
  af06a5c7
Jun 02, 2020
- source-data handle · 7d1653c9
  Arthur Le Bars authored 4 years ago
  
  7d1653c9
May 26, 2020
- EOL fix · ce0fe4ba
  Arthur Le Bars authored 4 years ago
  
  ce0fe4ba
Apr 09, 2020
- Update README.md · c961abf8
  Loraine Gueguen authored 4 years ago
  
  c961abf8
- fixing local repo · 524659da
  Arthur Le Bars authored 4 years ago
  
  524659da
- Delete toy.json · bed57e8b
  Arthur Le Bars authored 4 years ago
  
  bed57e8b
- Delete workflow.py · 3e598ebb
  Arthur Le Bars authored 4 years ago
  
  3e598ebb
- Delete filetransfer.py · cea3f321
  Arthur Le Bars authored 4 years ago
  
  cea3f321
- Delete stack_template.yml · a3260db6
  Arthur Le Bars authored 4 years ago
  
  a3260db6
- Delete toolrunner.py · e3684af9
  Arthur Le Bars authored 4 years ago
  
  e3684af9
- Delete runner.py · 881397a2
  Arthur Le Bars authored 4 years ago
  
  881397a2
- Delete phaeoexplorer-change_transcript_fasta_header.sh · 1a7ee2bc
  Arthur Le Bars authored 4 years ago
  
  1a7ee2bc
- Delete phaeoexplorer-change_pep_fasta_header.sh · 8c4e4634
  Arthur Le Bars authored 4 years ago
  
  8c4e4634
- Delete parser.py · d4a241b8
  Arthur Le Bars authored 4 years ago
  
  d4a241b8
- Delete dataloader.json · 871e1f5e
  Arthur Le Bars authored 4 years ago
  
  871e1f5e
- Delete main.py · 48cdd5a7
  Arthur Le Bars authored 4 years ago
  
  48cdd5a7
- Delete compose-template.yml · 65f38814
  Arthur Le Bars authored 4 years ago
  
  65f38814
- Delete common-stringSubsitute.py · 3ffeab20
  Arthur Le Bars authored 4 years ago
  
  3ffeab20
- Delete docker-compose.yml · 4e790ed7
  Arthur Le Bars authored 4 years ago
  
  4e790ed7
- Delete blastdb.py · d4395ecb
  Arthur Le Bars authored 4 years ago
  
  d4395ecb
- Delete tool_example.json · c0111d89
  Arthur Le Bars authored 4 years ago
  
  c0111d89
- Delete ADD_ORGA_ADD_GENOME_ADD_OGS.ga · a0899f0e
  Arthur Le Bars authored 4 years ago
  
  a0899f0e
- Delete IDEAS.md · 69177897
  Arthur Le Bars authored 4 years ago
  
  69177897
- dev usage, added requirements · 0b459ad4
  Arthur Le Bars authored 4 years ago
  
  0b459ad4
- tidying up the repo · b33e6219
  Arthur Le Bars authored 4 years ago
  
  b33e6219
- doc · eaa18fbb
  Arthur Le Bars authored 4 years ago
  
  eaa18fbb
Mar 27, 2020
- added docker_compose_generator.py, both as standalone and integrated to autoload.py · 04d0985d
  Arthur Le Bars authored 4 years ago
  
  04d0985d
Mar 25, 2020
- added use of new scripts before data loading (headers+blastdb) · 67ce6973
  Mada2 authored 5 years ago
  
  67ce6973