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Commit 58c3c821 authored by Arthur Le Bars's avatar Arthur Le Bars
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Fix for bioblend get_datasets method throwing ConnectionError

parent ca829bee
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2 merge requests!47v2.5.0,!34WIP: blast and interpro workflow
...@@ -298,8 +298,8 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow): ...@@ -298,8 +298,8 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow):
blastp_ldda_id = ldda_id blastp_ldda_id = ldda_id
elif ldda_name.endswith(self.blastx_filename): elif ldda_name.endswith(self.blastx_filename):
blastx_ldda_id = ldda_id blastx_ldda_id = ldda_id
hda_list = self.instance.datasets.get_datasets(self.history_id) hda_list = self.instance.datasets.get_datasets()
# Finding datasets in history (matching datasets names) # Finding datasets in history (matching datasets names)
for hda in hda_list: for hda in hda_list:
hda_name = hda["name"] hda_name = hda["name"]
......
...@@ -150,6 +150,7 @@ def install_repository_revision(instance, tool_id, version, changeset_revision): ...@@ -150,6 +150,7 @@ def install_repository_revision(instance, tool_id, version, changeset_revision):
install_repository_dependencies=False, install_repository_dependencies=False,
install_resolver_dependencies=True) install_resolver_dependencies=True)
def install_workflow_tools(instance, workflow_path): def install_workflow_tools(instance, workflow_path):
""" """
Read a .ga file to extract the information about the different tools called. Read a .ga file to extract the information about the different tools called.
......
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