Update to wf_v7: sync in wf

gga_init.py

@@ -341,6 +341,7 @@ def deploy_stacks(input_list, main_dir, deploy_traefik):
     logging.info("Updating traefik stack")
     run_docker_stack_deploy("traefik", traefik_dir)
 
+    #TODO: add test to check that the network/name resolution is fine in each galaxy container
 
 if __name__ == "__main__":
     parser = argparse.ArgumentParser(description="Deploy GGA containers")

gga_run_workflow_phaeo_jbrowse.py

@@ -388,6 +388,8 @@ if __name__ == "__main__":
         main_dir=main_dir,
         config=config)
 
+    # TODO: store wf param of all strains from the same species and run wf, don't wait for all org
+
     for genus_species, strains in all_org_wf_param_dict.items():
         strains_list = list(strains.keys())
         strains_count = len(strains_list)