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Commit f3644d24 authored by Arthur Le Bars's avatar Arthur Le Bars
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rollback workflow version

parent aa412602
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2 merge requests!9Release 2.0 (merge dev to master),!5Workflow v2
...@@ -987,7 +987,7 @@ if __name__ == "__main__": ...@@ -987,7 +987,7 @@ if __name__ == "__main__":
logging.info("Input organism %s: 2 species detected in input dictionary" % k) logging.info("Input organism %s: 2 species detected in input dictionary" % k)
# Set workflow path (2 organisms) # Set workflow path (2 organisms)
workflow_path = os.path.join(os.path.abspath(script_dir), "workflows_phaeoexplorer/Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_2org_v3.ga") workflow_path = os.path.join(os.path.abspath(script_dir), "workflows_phaeoexplorer/Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_2org_v2.ga")
# Instance object required variables # Instance object required variables
instance_url, email, password = None, None, None instance_url, email, password = None, None, None
...@@ -1084,7 +1084,6 @@ if __name__ == "__main__": ...@@ -1084,7 +1084,6 @@ if __name__ == "__main__":
# Look for empty parameters values, throw a critical error if a parameter value is invalid # Look for empty parameters values, throw a critical error if a parameter value is invalid
for param_name, param_value in org2_parameters_dict.items(): for param_name, param_value in org2_parameters_dict.items():
logging.info("Parameters for organism 1 (%s)" % org2_full_name)
if param_value is None or param_value == "": if param_value is None or param_value == "":
logging.critical("Empty parameter found for organism {0} (parameter: {1}, parameter value: {2})".format(org2_full_name, param_name, param_value)) logging.critical("Empty parameter found for organism {0} (parameter: {1}, parameter value: {2})".format(org2_full_name, param_name, param_value))
sys.exit() sys.exit()
......
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