- May 24, 2021
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Arthur Le Bars authored
Throw a critical error while parsing the supplied config file when a parameter is not configured or configured incorrectly (empty value) in the config file
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- May 21, 2021
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Loraine Gueguen authored
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- May 20, 2021
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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- May 18, 2021
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Arthur Le Bars authored
Sync analyses and organism in run_workflow_phaeoexplorer.py, added organism picture for tripal pages
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- May 16, 2021
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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- May 15, 2021
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Loraine Gueguen authored
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Loraine Gueguen authored
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- May 14, 2021
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Loraine Gueguen authored
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Loraine Gueguen authored
Move constants to file constants.py. Change config root to dict and update parse_config(). Change some config parameters name (galaxy_persist_data, tripal_banner_path, jbrowse_menu_url), update example config file and compose templates. Remove apollo config variables (webapollo_user, webapollo_password) in config file and in gspecies compose template, because apollo service not deployed here. Factorize parse_input() et parse_config(). Update description of scripts in main. Set default config file in scripts. Remove useless variable datasets_to_get in gga_get_data.py. Update README.md.
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- May 11, 2021
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Loraine Gueguen authored
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- May 07, 2021
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Loraine Gueguen authored
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Loraine Gueguen authored
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- May 04, 2021
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
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Loraine Gueguen authored
Fix logging text. Keep species with best assembly in get_uniq_species_dict_list() (will be main jbrowse url).
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- Mar 29, 2021
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Loraine Guéguen authored
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- Mar 25, 2021
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Arthur Le Bars authored
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Arthur Le Bars authored
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- Mar 19, 2021
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Arthur Le Bars authored
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- Mar 09, 2021
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Arthur Le Bars authored
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- Mar 01, 2021
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Arthur Le Bars authored
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- Feb 22, 2021
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Loraine Guéguen authored
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- Feb 02, 2021
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Arthur Le Bars authored
Separated gga_load_data into a get_data part and a load part. Also handling the get_data part with specific paths and fixed some issues with the code (reworked functions and removing deprecated code).
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- Jan 29, 2021
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Arthur Le Bars authored
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- Jan 28, 2021
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Arthur Le Bars authored
jinja templating, more workflow changes, trying fixes for the jbrowse gmod tool using API (in progress)
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- Jan 13, 2021
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Arthur Le Bars authored
more config options (host, passwords, tripal themes), adapted methods to handle several histories in the same instance
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