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Commit dce8482b authored by Arthur Le Bars's avatar Arthur Le Bars Committed by Loraine Gueguen
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typo fix: debug logging to display analysis IDs used by galaxy tools (blast interpro workflow)

parent b4965f39
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2 merge requests!47v2.5.0,!34WIP: blast and interpro workflow
......@@ -509,7 +509,7 @@ if __name__ == "__main__":
# It affects the first analysis found (genome analysis) instead of the provided ones below
# Use --verbose argument to get debug logging to display the analysis IDs
logging.debug("Blastp analysis id for organism 1 ({0}): {1}".format(genus_species, org_wf_param.blastp_analysis_id))
logging.debug("Blastx analysis id for organism 1 ({0}): {1}".format(genus_species, org_wf_param.blastp_analysis_id))
logging.debug("Blastx analysis id for organism 1 ({0}): {1}".format(genus_species, org_wf_param.blastx_analysis_id))
logging.debug("InterProScan analysis id for organism 1 ({0}): {1}".format(genus_species , org_wf_param.interpro_analysis_id))
# Input files have no parameters (they are set via assigning the hda IDs in the datamap parameter of the bioblend method)
......@@ -599,12 +599,12 @@ if __name__ == "__main__":
# It affects the first analysis found (genome analysis) instead of the provided ones below
# Use --verbose argument to get debug logging to display the analysis IDs
logging.debug("Blastp analysis id for organism 1 ({0}, {1}): {2}".format(genus_species, strain_sex_org1, sp_wf_param_org1.blastp_analysis_id))
logging.debug("Blastx analysis id for organism 1 ({0}, {1}): {2}".format(genus_species, strain_sex_org1, sp_wf_param_org1.blastp_analysis_id))
logging.debug("Blastx analysis id for organism 1 ({0}, {1}): {2}".format(genus_species, strain_sex_org1, sp_wf_param_org1.blastx_analysis_id))
logging.debug("InterProScan analysis id for organism 1 ({0}, {1}): {2}".format(genus_species, strain_sex_org1, sp_wf_param_org1.interpro_analysis_id))
logging.debug("Blastp analysis id for organism 2 ({0}, {1}): {2}".format(genus_species, strain_sex_org2, sp_wf_param_org2.blastp_analysis_id))
logging.debug("Blastx analysis id for organism 2 ({0}, {1}): {2}".format(genus_species, strain_sex_org2, sp_wf_param_org2.blastp_analysis_id))
logging.debug("Blastx analysis id for organism 2 ({0}, {1}): {2}".format(genus_species, strain_sex_org2, sp_wf_param_org2.blastx_analysis_id))
logging.debug("InterProScan analysis id for organism 2 ({0}, {1}): {2}".format(genus_species, strain_sex_org2, sp_wf_param_org2.interpro_analysis_id))
# Input files have no parameters (they are set via assigning the hda IDs in the datamap parameter of the bioblend method)
workflow_parameters[constants_phaeo.WF_BLAST_INTERPRO_2_ORG_INPUT_BLASTP_ORG1] = {}
workflow_parameters[constants_phaeo.WF_BLAST_INTERPRO_2_ORG_INPUT_BLASTP_ORG2] = {}
......
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