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Commit e9a0a824 authored by Loraine Guéguen's avatar Loraine Guéguen
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Update README

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...@@ -66,7 +66,7 @@ in the `examples` folder. ...@@ -66,7 +66,7 @@ in the `examples` folder.
**The input file and config file have to be the same for all scripts!** **The input file and config file have to be the same for all scripts!**
- Deploy stacks part: - Deploy Docker stacks:
```bash ```bash
$ python3 /path/to/repo/gga_init.py input_file.yml \ $ python3 /path/to/repo/gga_init.py input_file.yml \
...@@ -76,7 +76,7 @@ $ python3 /path/to/repo/gga_init.py input_file.yml \ ...@@ -76,7 +76,7 @@ $ python3 /path/to/repo/gga_init.py input_file.yml \
[-v/--verbose] [-v/--verbose]
``` ```
- Copy source data file: - Copy source data files:
```bash ```bash
$ python3 /path/to/repo/gga_get_data.py input_file.yml \ $ python3 /path/to/repo/gga_get_data.py input_file.yml \
...@@ -93,7 +93,7 @@ $ python3 /path/to/repo/gga_load_data.py input_file.yml \ ...@@ -93,7 +93,7 @@ $ python3 /path/to/repo/gga_load_data.py input_file.yml \
[-v/--verbose] [-v/--verbose]
``` ```
- Run a workflow in galaxy (example): - Run a workflow in Galaxy (example script, specific to Phaeoexplorer data):
```bash ```bash
$ python3 /path/to/repo/gga_run_workflow_phaeo_jbrowse.py input_file.yml \ $ python3 /path/to/repo/gga_run_workflow_phaeo_jbrowse.py input_file.yml \
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