Commits · 06ed01a329bd3957456f29ce405a4a2e93c5c289 · abims / e-infra / gga_load_data

Mar 23, 2021
- instanceu_url format fix · 06ed01a3
  Arthur Le Bars authored 4 years ago
  
  06ed01a3
- gga_load_data bugfix · fb17d532
  Arthur Le Bars authored 4 years ago
  
  fb17d532
- protein naming capture regex change in chado load tripal sync workflow · 263111fc
  Arthur Le Bars authored 4 years ago
  
  263111fc
- removed whitespace in compose template · d368221c
  Arthur Le Bars authored 4 years ago
  
  d368221c
Mar 22, 2021
- call make_directory_tree() in gga_get_data · fd5e9a0f
  Arthur Le Bars authored 4 years ago
  
  fd5e9a0f
- get_data docstring indentation · 8f3cbcc5
  Arthur Le Bars authored 4 years ago
  
  8f3cbcc5
- species compose update · 813735d8
  Arthur Le Bars authored 4 years ago
  
  813735d8
- services traefik rules fix · 18e66dbb
  Arthur Le Bars authored 4 years ago
  
  18e66dbb
- correct rules in services · 5da47ead
  Arthur Le Bars authored 4 years ago
  
  5da47ead
- jinja2 template syntax error fix · ad743e3e
  Arthur Le Bars authored 4 years ago
  
  ad743e3e
- elasticsearch memory lock removed · 6d44b97d
  Arthur Le Bars authored 4 years ago
  
  6d44b97d
- removed yml template (not jinja2) · 4a12ac67
  Arthur Le Bars authored 4 years ago
  
  4a12ac67
- web/webs modes in jinja templates · 51fe0090
  Arthur Le Bars authored 4 years ago
  
  51fe0090
- new gspecies docker compose template · c31da771
  Arthur Le Bars authored 4 years ago
  
  c31da771
- localhost instance access · 451b8550
  Arthur Le Bars authored 4 years ago
  
  451b8550
Mar 19, 2021
- Merge branch 'dev' of gitlab.sb-roscoff.fr:abims/e-infra/gga_load_data into dev · 868c459a
  Arthur Le Bars authored 4 years ago
  
  868c459a
- src_data dir tree created in gga_get_data · 8d36dd97
  Arthur Le Bars authored 4 years ago
  
  8d36dd97
Mar 18, 2021
- add example data · 30e6fc3a
  Loraine Guéguen authored 4 years ago
  
  30e6fc3a
Mar 11, 2021
- datasets import and detection depending on organism, version and history now working correctly · 682f375b
  Arthur Le Bars authored 4 years ago
  
  682f375b
Mar 10, 2021
- fixed hda ids attribution in run_workflow_phaeoexplorer · 5e33708d
  Arthur Le Bars authored 4 years ago
  
  5e33708d
Mar 09, 2021
- syntax error fix · 8410d92b
  Arthur Le Bars authored 4 years ago
  
  8410d92b
- indent error fix · 968d06aa
  Arthur Le Bars authored 4 years ago
  
  968d06aa
- indent error fix · 2af83972
  Arthur Le Bars authored 4 years ago
  
  2af83972
- using localhost rule to connect to instance via http · 2717274d
  Arthur Le Bars authored 4 years ago
  
  2717274d
- delete gga_preprocessing · a9df26bb
  Arthur Le Bars authored 4 years ago
  
  a9df26bb
- toolshed version+changeset validation and refactoring · c161a821
  Arthur Le Bars authored 4 years ago
  
  c161a821
Mar 01, 2021
- serexec chmod moved to utilities, 'deploy' input list moved to utilities · f5552b4d
  Arthur Le Bars authored 4 years ago
  
  f5552b4d
Feb 22, 2021
- Always connect to galaxy with localhost as hostname · ec4a3d74
  Loraine Guéguen authored 4 years ago
  
  ec4a3d74
- Always connect to galaxy with localhost as hostname · 9aec58bf
  Loraine Guéguen authored 4 years ago
  
  9aec58bf
- Update for python 3.6 · 7129f440
  Loraine Guéguen authored 4 years ago
  
  7129f440
- cleanup repo · 0f358a5f
  Arthur Le Bars authored 4 years ago
  
  0f358a5f
- cleanup repo · 02a416e9
  Arthur Le Bars authored 4 years ago
  
  02a416e9
- update readme and examples · 2038c89d
  Arthur Le Bars authored 4 years ago
  
  2038c89d
- fixed workflow invocation in run_workflow and datasets copy in gga_get_data · 9dd73617
  Arthur Le Bars authored 4 years ago
  
  9dd73617
Feb 19, 2021
- Update get_data and load_data scripts (+gga_preprocessing update) · b43ae9d1
  Arthur Le Bars authored 4 years ago
  
  b43ae9d1
Feb 18, 2021
- delete template for authelia phaeoexplorer · 3bfdc8df
  Arthur Le Bars authored 4 years ago
  
  3bfdc8df
- jinja2 templating for authelia and traefik entrypoint and host, gga_get_data... · dfe0f00f
  Arthur Le Bars authored 4 years ago
```
jinja2 templating for authelia and traefik entrypoint and host, gga_get_data only copies files that exist
```
  dfe0f00f
Feb 16, 2021

Cleaned up gga_init step (traefik setup and update is done separately), some... · 23f96940

Arthur Le Bars authored 4 years ago

Cleaned up gga_init step (traefik setup and update is done separately), some changes to speciesData (use the input generator script in phaeoexplorer-tools to have the correct  attributes), trying changes to invoke workflow (WIP)

23f96940

Feb 11, 2021
- speciesData assigns correct species_folder_name attribute · c825e6be
  Arthur Le Bars authored 4 years ago
  
  c825e6be
Feb 05, 2021
- Added interpro and blast workflows and methods · b33c4b5e
  Arthur Le Bars authored 4 years ago
  
  b33c4b5e