Commits · 28a1d904eedcfa28b5a908d3fc6830d5b46ed69e · abims / e-infra / gga_load_data · GitLab

Snippets Groups Projects

May 05, 2021
- Workflow and script pipeline fixes · 29933ed3
  Arthur Le Bars authored 4 years ago
  
  29933ed3
May 04, 2021
- rollback workflow version · f3644d24
  Arthur Le Bars authored 4 years ago
  
  f3644d24
- fix · aa412602
  Arthur Le Bars authored 4 years ago
  
  aa412602
- fix for chado ids · 2eed9230
  Arthur Le Bars authored 4 years ago
  
  2eed9230
- fix · 3a5a747b
  Arthur Le Bars authored 4 years ago
  
  3a5a747b
- reworked datasets and Chado IDs assignation · 08074e9b
  Arthur Le Bars authored 4 years ago
  
  08074e9b
Apr 30, 2021
- Worfklow 2 organisms v3 · cb7db4d8
  Arthur Le Bars authored 4 years ago
  
  cb7db4d8
- Let galaxy decide which versions of tools it wants to use for gga_load_data.py · a1d874e2
  Arthur Le Bars authored 4 years ago
  
  a1d874e2
- workflow 2org · 6ba67a53
  Arthur Le Bars authored 4 years ago
  
  6ba67a53
Apr 27, 2021
- workflow v2 initial commit · 8fb9904a
  Arthur Le Bars authored 4 years ago
  
  8fb9904a
Apr 20, 2021
- fix typo, renamed files in 'files' dir, fix for jbrowee menu url · f579a28a
  Arthur Le Bars authored 4 years ago
  
  f579a28a
Apr 14, 2021
- parameters fix · a42920d6
  Arthur Le Bars authored 4 years ago
  
  a42920d6
Apr 08, 2021
- clearer authentication domain name variable, changed jbrowse menu_url assign · e0b28ab6
  Arthur Le Bars authored 4 years ago
  
  e0b28ab6
Mar 29, 2021
- make python scripts executable · 7fb2d08e
  Loraine Guéguen authored 4 years ago
  
  7fb2d08e
Mar 25, 2021
- changes before 0.1 release · 836cf194
  Arthur Le Bars authored 4 years ago
  
  836cf194
Mar 23, 2021
- connection to instance fix · 4bb1a35c
  Arthur Le Bars authored 4 years ago
  
  4bb1a35c
- logging url when connecting · 039be6e7
  Arthur Le Bars authored 4 years ago
  
  039be6e7
- instanceu_url format fix · 06ed01a3
  Arthur Le Bars authored 4 years ago
  
  06ed01a3
Mar 22, 2021
- localhost instance access · 451b8550
  Arthur Le Bars authored 4 years ago
  
  451b8550
Mar 19, 2021
- src_data dir tree created in gga_get_data · 8d36dd97
  Arthur Le Bars authored 4 years ago
  
  8d36dd97
Mar 11, 2021
- datasets import and detection depending on organism, version and history now working correctly · 682f375b
  Arthur Le Bars authored 4 years ago
  
  682f375b
Mar 10, 2021
- fixed hda ids attribution in run_workflow_phaeoexplorer · 5e33708d
  Arthur Le Bars authored 4 years ago
  
  5e33708d
Mar 09, 2021
- syntax error fix · 8410d92b
  Arthur Le Bars authored 4 years ago
  
  8410d92b
- indent error fix · 968d06aa
  Arthur Le Bars authored 4 years ago
  
  968d06aa
- indent error fix · 2af83972
  Arthur Le Bars authored 4 years ago
  
  2af83972
- using localhost rule to connect to instance via http · 2717274d
  Arthur Le Bars authored 4 years ago
  
  2717274d
- toolshed version+changeset validation and refactoring · c161a821
  Arthur Le Bars authored 4 years ago
  
  c161a821
Mar 01, 2021
- serexec chmod moved to utilities, 'deploy' input list moved to utilities · f5552b4d
  Arthur Le Bars authored 4 years ago
  
  f5552b4d
Feb 22, 2021
- Always connect to galaxy with localhost as hostname · ec4a3d74
  Loraine Guéguen authored 4 years ago
  
  ec4a3d74
- fixed workflow invocation in run_workflow and datasets copy in gga_get_data · 9dd73617
  Arthur Le Bars authored 4 years ago
  
  9dd73617
Feb 16, 2021
- Cleaned up gga_init step (traefik setup and update is done separately), some... · 23f96940
  Arthur Le Bars authored 4 years ago
  23f96940
Feb 05, 2021
- Added interpro and blast workflows and methods · b33c4b5e
  Arthur Le Bars authored 4 years ago
  
  b33c4b5e
Feb 04, 2021
- Pipeline v1.0 ready, missing orthology data and template workflows for blastp... · 13e0e68a
  Arthur Le Bars authored 4 years ago
  13e0e68a
Jan 28, 2021
- Fixed Jbrowse workflow (removed runtime str parameter altogether) plus some... · 10ddfb28
  Arthur Le Bars authored 4 years ago
  10ddfb28
- Jbrowse workflow invocation steps and mapping fixes · 465597c3
  Arthur Le Bars authored 4 years ago
  
  465597c3
- jinja templating, more workflow changes, trying fixes for the jbrowse gmod... · dc2e8f3a
  Arthur Le Bars authored 4 years ago
  dc2e8f3a
Jan 21, 2021
- Fixed toolshed version issue (now using 2.3.3 GMOD tools), added new Jbrowse workflow · 1d0a9b5c
  Arthur Le Bars authored 4 years ago
  
  1d0a9b5c
- Removing some old code, renaming files and run_workflow update for chado/sync tripal workflow · d4e04494
  Arthur Le Bars authored 4 years ago
  
  d4e04494
Jan 19, 2021
- run_workflow changes (functional again), some optimisation in gga_init,... · 0a5b7a63
  Arthur Le Bars authored 4 years ago
  0a5b7a63
Jan 18, 2021
- Added demo · 5c2296d0
  Arthur Le Bars authored 4 years ago
  
  5c2296d0