jinja2 templating for authelia and traefik entrypoint and host, gga_get_data only copies files that exist

Cleaned up gga_init step (traefik setup and update is done separately), some changes to speciesData (use the input generator script in phaeoexplorer-tools to have the correct  attributes), trying changes to invoke workflow (WIP)

Pipeline v1.0 ready, missing orthology data and template workflows for blastp (diamond) and interpro. The data preprocessing for phaeoexplorer script is available in the phaeoexplorer-tools repo (but is not usable as a standalone)

Separated gga_load_data into a get_data part and a load part. Also handling the get_data part with specific paths and fixed some issues with the code (reworked functions and removing deprecated code).

Fixed Jbrowse workflow (removed runtime str parameter altogether) plus some formatting and code cleaning

jinja templating, more workflow changes, trying fixes for the jbrowse gmod tool using API (in progress)