Commits · 91c3500dc44821fd8503dc3b4dfe10a85479620f · abims / e-infra / gga_load_data

May 11, 2021
- Remove unused imports. Update Readme. Factorize goto_species_dir() · 91c3500d
  Loraine Gueguen authored 3 years ago
  
  91c3500d
May 10, 2021
- Merge branch 'todo_release_1.1' into 'dev' · 28a1d904
  Loraine Gueguen authored 3 years ago
```
Release 2.0

See merge request !8
```
  28a1d904
- Update citrus_sinensis.yml · b42a7aa8
  Loraine Gueguen authored 3 years ago
  
  b42a7aa8
May 08, 2021
- fix verbose arg · 524edeff
  Loraine Gueguen authored 3 years ago
  
  524edeff
- fix verbose arg · ea9cbfe5
  Loraine Gueguen authored 3 years ago
  
  ea9cbfe5
May 07, 2021
- fix banner condition · 57ab77f5
  Loraine Gueguen authored 3 years ago
  
  57ab77f5
- fix get_gspecies_string_from_sp_dict · 12009e55
  Loraine Gueguen authored 3 years ago
  
  12009e55
- fix citrus_sinensis input · 49659b20
  Loraine Gueguen authored 3 years ago
  
  49659b20
- Remove comment · e096fa81
  Loraine Gueguen authored 3 years ago
  
  e096fa81
- Convert root organisms.yml to list instead of dict · 7e68e768
  Loraine Gueguen authored 3 years ago
  
  7e68e768
May 06, 2021
- Add file's last modified date to the new gff filename · 40d006ab
  Loraine Gueguen authored 3 years ago
  
  40d006ab
- Remove replace() · 658773c7
  Loraine Gueguen authored 3 years ago
  
  658773c7
- Symlink banner instead of copy, in speciesDir · d94dc42c
  Loraine Gueguen authored 3 years ago
  
  d94dc42c
- Merge branch 'workflow_v2' into 'dev' · 9b4f2a91
  Loraine Gueguen authored 3 years ago
```
Workflow v2

See merge request !5
```
  9b4f2a91
May 05, 2021
- Workflow and script pipeline fixes · 29933ed3
  Arthur Le Bars authored 3 years ago
  
  29933ed3
May 04, 2021
- rollback workflow version · f3644d24
  Arthur Le Bars authored 3 years ago
  
  f3644d24
- fix · aa412602
  Arthur Le Bars authored 3 years ago
  
  aa412602
- analysis versions as string · 8d50f6e9
  Arthur Le Bars authored 3 years ago
  
  8d50f6e9
- fix for chado ids · 2eed9230
  Arthur Le Bars authored 3 years ago
  
  2eed9230
- fix · 3a5a747b
  Arthur Le Bars authored 3 years ago
  
  3a5a747b
- workflow 2org v3 · e96ba393
  Arthur Le Bars authored 3 years ago
  
  e96ba393
- removed obsolete code · dbd5d298
  Arthur Le Bars authored 3 years ago
  
  dbd5d298
- Merge branch 'dev' into workflow_v2 · 696dea98
  Loraine Gueguen authored 3 years ago
```
# Conflicts:
#	gga_init.py
#	speciesData.py
#	templates/gspecies_compose.yml.j2
#	workflows_phaeoexplorer/Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_2org_v3.ga
```
  696dea98
- Merge branch 'todo_release_1.1' into 'dev' · 273fb7c9
  Loraine Gueguen authored 3 years ago
```
Todo release 1.1

See merge request !6
```
  273fb7c9
- reworked datasets and Chado IDs assignation · 08074e9b
  Arthur Le Bars authored 3 years ago
  
  08074e9b
- factorize code · 83952b0c
  Loraine Gueguen authored 3 years ago
  
  83952b0c
- Fix banner · 97d5505a
  Loraine Gueguen authored 3 years ago
  
  97d5505a
- Fix banner · f5ab8abe
  Loraine Gueguen authored 3 years ago
  
  f5ab8abe
- Fix banner · 95eda47b
  Loraine Gueguen authored 3 years ago
  
  95eda47b
- Fix banner · 6d9203b8
  Loraine Gueguen authored 3 years ago
  
  6d9203b8
- Keep species with best assembly in get_uniq_species_dict_list() (will be main jbrowse url). · 1b2e200c
  Loraine Gueguen authored 3 years ago
  
  1b2e200c
- Keep species with best assembly in get_uniq_species_dict_list() (will be main jbrowse url). · 88c7278b
  Loraine Gueguen authored 3 years ago
  
  88c7278b
- Keep species with best assembly in get_uniq_species_dict_list() (will be main jbrowse url). · c7175f83
  Loraine Gueguen authored 3 years ago
  
  c7175f83
- Keep species with best assembly in get_uniq_species_dict_list() (will be main jbrowse url). · 050ba27e
  Loraine Gueguen authored 3 years ago
  
  050ba27e
- Keep species with best assembly in get_uniq_species_dict_list() (will be main jbrowse url). · 2dfc5e7a
  Loraine Gueguen authored 3 years ago
  
  2dfc5e7a
- Fix logging text. Keep species with best assembly in... · 9431430e
  Loraine Gueguen authored 3 years ago
```
Fix logging text. Keep species with best assembly in get_uniq_species_dict_list() (will be main jbrowse url).
```
  9431430e
- Keep create_mounts · 0e3da3a0
  Loraine Gueguen authored 3 years ago
  
  0e3da3a0
- Fix config · d25ec3c6
  Loraine Gueguen authored 3 years ago
  
  d25ec3c6
- Add clean function in SpeciesData · 65868909
  Loraine Gueguen authored 3 years ago
  
  65868909
- Add clean function in SpeciesData · 8223b710
  Loraine Gueguen authored 3 years ago
  
  8223b710